4L15,5W0T,4LGM,4D80,4D81,4LCB,4D82,3B9P,2QP9,3D8B,5WC0,6B5C,6B5D


Conserved Protein Domain Family
RecA-like_VPS4-like

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cd19509: RecA-like_VPS4-like 
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains
This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Statistics
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PSSM-Id: 410917
Aligned: 16 rows
Threshold Bit Score: 244.954
Created: 28-Nov-2017
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindinghexamer
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:4D81; Metallosphaera sedula Vps4 with bound ADP, contacts at 4A
    View structure with Cn3D
  • Comment:contains Walker A and Walker B motifs

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ####                                      #######                               
4L15_A     58 VAGLEGAKKALREIVVLPFKRPDvftgi--rappKGVLLFGPPGTGKTMIGRCVAsqckaTFFNISASSLTSKWvgegek 135 Caenorhabditis ele...
5W0T_A     44 IGGLDPLISDLHESVIYPLXXPEvysnspllqapSGVLLYGPPGCGKTXLAKALAkesgaNFISIRXSSIXDKWygesnk 123 Saccharomyces cere...
4LGM_A     28 IVGLDDVKEALREAIIYPTKRPDlfpl----gwpRGILLYGPPGCGKTMIAAAVAneidsIFMQLDAASVMSKWlgeaek 103 Sulfolobus solfata...
4D80_A     49 IVGLEDVKEALKEAVVYPSKRPDlfpl----gwpRGILLYGPPGCGKTMIAAAVAneldsEFIHVDAASIMSKWlgeaek 124 Metallosphaera sedula
4D81_A     16 IVGLEDVKEALKEAVVYPSKRPDlfpl----gwpRGILLYGPPGCGKTMIAAAVAneldsEFIHVDAASIMSKWlgeaek 91  Metallosphaera sedula
4LCB_A    101 IVGLDDVKEALKEAIIYPSKRPDlfpl----gwpRGILLYGPPGNGKTMLAAAVAneidsYFIHVDAASIMSKWlgeaek 176 Acidianus hospital...
4D82_A     29 IVGLEDVKEALKEAVVYPSKRPDlfpl----gwpRGILLYGPPGCGKTMIAAAVAneldsEFIHVDAASIMSKWlgeaek 104 Metallosphaera sedula
Q9ERZ6    488 IAGLDLVKAVIKEEVLWPVLRSDafsgl--talpRSILLFGPRGTGKTLLGRCIAsqlgaTFFKIAGSGLVAKWigeaek 565 house mouse
3B9P_A     23 IAGQDVAKQALQEMVILPSVRPElftgl--rapaKGLLLFGPPGNGKTLLARAVAtecsaTFLNISAASLTSKYvgdgek 100 fruit fly
3D8B_A     86 IAGVEFAKATIKEIVVWPMLRPDiftgl--rgppKGILLFGPPGTGKTLIGKCIAsqsgaTFFSISASSLTSKWvgegek 163 human
Feature 1                                                                                     
4L15_A    136 lVRALFSVARLk-----lPSVIFIDEIDsllssrsesehessRRIKTEFLVQLdgvnta-pderlLVLGATNrpqeLDEA 209 Caenorhabditis ele...
5W0T_A    124 iVDAXFSLANKl-----qPCIIFIDEIDsflrersstdhevtATLKAEFXTLWdglln---ngrvXIIGATNrindIDDA 195 Saccharomyces cere...
4LGM_A    104 nVANVFKMAREeskkqnkPAIIFIDQLDallgvys-tevggeARVRNQFLKEMdglldksenykvYVIGATNkpwrLDEA 182 Sulfolobus solfata...
4D80_A    125 nVAKIFKTARElskkenkPAIIFIDELDallasyt-sevggeARVRNQFLKEMdgladkneiskvYVIGATNkpwrLDEP 203 Metallosphaera sedula
4D81_A     92 nVAKIFKTARElskkenkPAIIFIDELDallasyt-sevggeARVRNQFLKEMdgladkneiskvYVIGATNkpwrLDEP 170 Metallosphaera sedula
4LCB_A    177 nVAKIFNTAREyskkdnkPAIIFVDEIDallgtyt-sevggeVRVRNQFLKEMdgimdknenymvYVIGATNkpwrLDEP 255 Acidianus hospital...
4D82_A    105 nVAKIFKTARElskkenkPAIIFIDELDallasyt-sevggeARVRNQFLKEMdgladkneiskvYVIGATNkpwrLDEP 183 Metallosphaera sedula
Q9ERZ6    566 iIHASFLVARCr-----qPSVIFVSDIDmllssqvseehspvSRMRTEFLMQLdtvlts-aedqiVVICATSkpeeIDES 639 house mouse
3B9P_A    101 lVRALFAVARHm-----qPSIIFIDEVDsllserssseheasRRLKTEFLVEFdglpgnpdgdriVVLAATNrpqeLDEA 175 fruit fly
3D8B_A    164 mVRALFAVARCq-----qPAVIFIDEIDsllsqrgdgehessRRIKTEFLVQLdgatts-sedriLVVGATNrpqeIDEA 237 human
Feature 1                
4L15_A    210 ARRRFQKRLYI 220 Caenorhabditis elegans
5W0T_A    196 FLRRLPKRFLV 206 Saccharomyces cerevisiae S288c
4LGM_A    183 FLRRFQKRIYV 193 Sulfolobus solfataricus P2
4D80_A    204 FLRRFQKRIYI 214 Metallosphaera sedula
4D81_A    171 FLRRFQKRIYI 181 Metallosphaera sedula
4LCB_A    256 FLRRFQKRIYV 266 Acidianus hospitalis W1
4D82_A    184 FLRRFQKRIYI 194 Metallosphaera sedula
Q9ERZ6    640 LRRYFMKRLLI 650 house mouse
3B9P_A    176 ALRRFTKRVYV 186 fruit fly
3D8B_A    238 ARRRLVKRLYI 248 human

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