5G4G,5E7P,2X8A,3CF0,5VC7


Conserved Protein Domain Family
RecA-like_CDC48_r2-like

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cd19511: RecA-like_CDC48_r2-like 
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains
This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Statistics
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PSSM-Id: 410919
Aligned: 16 rows
Threshold Bit Score: 254.516
Created: 28-Nov-2017
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindinghexamer
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:5E7P; Mycobacterium smegmatis CDC48 with bound ADP, contacts at 4A
    View structure with Cn3D
  • Comment:contains Walker A and Walker B motifs

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           ########                                      
5G4G_A        470 VKREIKETVELPLLKPDVFKRLGIRpsKGFLLYGPPGVGKTLLAKAVAtesnaNFISIKGPEVLSKWVGEsekaIREIFK 549  Thermoplasma ...
5E7P_A        493 TKRALTEAVLWPLQHPDTFSRLGIDppRGVLLYGPPGCGKTFVVRALAssgrlSVHAVKGSELMDKWVGSsekaVRELFA 572  Mycobacterium...
NP_728878     458 LKRTLQVSVLAGIRQSAAFARFGLSlpKGVLLYGPPGCAKTTVAKCLAkeadmTFIATSAAEVYSPYVGCaerfISRIFD 537  fruit fly
Q9BVQ7        472 VKLKLKQSIEWPLKFPWEFVRMGLTqpKGVLLYGPPGCAKTTLVRALAtschcSFVSVSGADLFSPFVGDsekvLSQIFR 551  human
Q3UMC0        635 IKLKLKQAVEWPLKHPKSFNRMGIQppKGVLLYGPPGCSKTMIAKALAnesglNFLAIKGPELMNKYVGEseraVREIFR 714  house mouse
Q6CPV1        710 VKGEIMDTIDMPLKHPELFSSGMKKr-SGILFYGPPGTGKTLLAKAIAsnfslNFFSVKGPELLNMYIGEseanVRRVFQ 788  Kluyveromyces...
NP_492211     467 LKLEIQQAVIWPQKHPEAFERFGIDppAGILLYGPPGCSKTLIARALAseakmNFLAVKGPELFSKWVGDsekaIRDLFS 546  Caenorhabditi...
YP_003770662  500 VKQSLTEAVLWPLRYPDSFARLGVEppRGVLLYGPPGGGKTFLVRALAgtgalNVFAVKGAELMDKWVGEseraVRELFR 579  Amycolatopsis...
NP_178463     294 LKKKLQQAVEWPIKHSAAFVKMGISpmRGILLHGPPGCSKTTLAKAAAnaaqaSFFSLSCAELFSMYVGEgealLRNTFQ 373  thale cress
NP_191228     732 VKNQLMEAVEWPQKHQDAFKRIGTRppSGILMFGPPGCSKTLMARAVAseaklNFLAVKGPELFSKWVGEsekaVRSLFA 811  thale cress
Feature 1                                                                                        #
5G4G_A        550 KAKQvapAIVFLDEIDSIAPRRgtt---sdsGVTERIVNQLLTSLDGievm-------------------ngvVVIGATN 607  Thermoplasma ...
5E7P_A        573 RARDsapSLVFLDEIDALAPRRgqn---fdsGVTDKVVASLLTELDGiepl-------------------rdvVVLGATN 630  Mycobacterium...
NP_728878     538 TARKnapCLIFLDEIDSLVGRRtvssgggggQVQLRILSTLLTEMNGivggg----------------sqqhiLVVAATN 601  fruit fly
Q9BVQ7        552 QARAstpAILFLDEIDSILGARsask--tgcDVQERVLSVLLNELDGvglktierrgskssqqefqevfnrsvMIIAATN 629  human
Q3UMC0        715 KARAvapSIIFFDELDALAVERgsss--gagNVADRVLAQLLTEMDGieql-------------------knvTVLAATN 773  house mouse
Q6CPV1        789 KARDakpCVIFFDELDSVAPKRgnqg--dsgGVMDRIVSQLLAELDGmssg------------------gdgvFVIGATN 848  Kluyveromyces...
NP_492211     547 RARQvapTIVFFDEIDAVGSSRgse---kssGVSDRVLAQLLTELDGleks-------------------srvILLAATN 604  Caenorhabditi...
YP_003770662  580 RAAEaapALIFLDEIDALAPRRgqs---sdsGVADRVVAALLTELDGvepm-------------------revVVLGATN 637  Amycolatopsis...
NP_178463     374 RARLaspSIIFFDEADVVACKRgdesssnssTVGERLLSTLLTEMDGleea-------------------kgiLVLAATN 434  thale cress
NP_191228     812 KARAnapSIIFFDEIDSLASIRgken--dgvSVSDRVMSQLLVELDGlhqr-------------------vgvTVIAATN 870  thale cress
Feature 1                              
5G4G_A        608 RPDIMDPALLRAGRFDKLIYI 628  Thermoplasma acidophilum
5E7P_A        631 RPDLIDPALLRPGRLERLVFV 651  Mycobacterium smegmatis str. MC2 155
NP_728878     602 RPDMIDDALLRPGRFDKLIHV 622  fruit fly
Q9BVQ7        630 RPDVLDTALLRPGRLDKIIYI 650  human
Q3UMC0        774 RPDRIDKALMRPGRIDRIIYV 794  house mouse
Q6CPV1        849 RPDLLDEALLRPGRFDKMLYL 869  Kluyveromyces lactis NRRL Y-1140
NP_492211     605 RPDQLDSALLRPGRLDRAIYV 625  Caenorhabditis elegans
YP_003770662  638 RPELVDPALLRPGRLERRVYV 658  Amycolatopsis mediterranei U32
NP_178463     435 RPYAIDAALMRPGRFDLVLYV 455  thale cress
NP_191228     871 RPDKIDSALLRPGRFDRLLYV 891  thale cress

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