2X8A


Conserved Protein Domain Family
RecA-like_NVL_r2-like

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cd19530: RecA-like_NVL_r2-like 
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains
NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Statistics
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PSSM-Id: 410938
Aligned: 5 rows
Threshold Bit Score: 283.225
Created: 14-Aug-2018
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ATP
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           ########                                  
2X8A_A     15 LEDIREELTMAILAPVRNPDQFKALGLVt-PAGVLLAGPPGCGKTLLAKAVAnesglNFISVKGPELLNMYVGESERAVR 93  human
NP_186810 533 LDHLRLQFNRYIVRPIKKPDIYKAFGVDl-ETGFLLYGPPGCGKTLIAKAAAneagaNFMHIKGAELLNKYVGESELAIR 611 thale cress
NP_496814 538 LVEVRKQLEWSILYPIKRADDFAALGIDcrPQGILLCGPPGCGKTLLAKAVAnetgmNFISVKGPELLNMYVGESERAVR 617 Caenorhabditis ele...
Q54SY2    571 LSGVREELTNSILRPIRYPKKYKNMGIDs-PAGVLMYGPPGCGKTLLAKAIAsecqaNFISVKGPELLNKYVGESERAVR 649 Dictyostelium disc...
O14325    497 LKSIRVELQMAIVQPIKRPELYQSVGISa-PTGVLLWGPPGCGKTLLAKAVAneskaNFISIRGPELLNKYVGESERAVR 575 fission yeast
Feature 1                                                                    #                
2X8A_A     94 QVFQRAKNsapCVIFFDEVDALCPRRsdr---etGASVRVVNQLLTEMDGleaRQQVFIMAATNRPDIIDPAILRPGRLD 170 human
NP_186810 612 TLFQRARTcapCVIFFDEVDALTTSRgke---gaWVVERLLNQFLVELDGg-eRRNVYVIGATNRPDVVDPAFLRPGRFG 687 thale cress
NP_496814 618 TVFQRARDsqpCVIFFDEIDALVPKRshg---esSGGARLVNQLLTEMDGvegRQKVFLIGATNRPDIVDAAILRPGRLD 694 Caenorhabditis ele...
Q54SY2    650 QVFQRAAAsspCVIFFDEFDALAPKRgggdgggnQATERVVNQLLTEMDGlekRSEVFIIAATNRPDIIDAAMCRPGRLD 729 Dictyostelium disc...
O14325    576 QVFLRARAsspCVIFFDELDAMVPRRdds---lsEASSRVVNTLLTELDGlsdRSGVYVIAATNRPDIIDPAMLRPGRLD 652 fission yeast
Feature 1          
2X8A_A    171 KTLFV 175 human
NP_186810 688 NLLYV 692 thale cress
NP_496814 695 KILFV 699 Caenorhabditis elegans
Q54SY2    730 KMVYV 734 Dictyostelium discoideum AX4
O14325    653 KTLLV 657 fission yeast

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