NF033920: C39_PA2778_fam (this model, PSSM-Id:411481 is obsolete and has been replaced by 468245)
PA2778 family cysteine peptidase
Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).
Jiyao W et al.(2023). "The conserved domain database in 2023.",