4S20


Conserved Protein Domain Family
RapA_C

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pfam12137: RapA_C 
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RNA polymerase recycling family C-terminal
This domain is found in bacteria. This domain is about 360 amino acids in length. This domain is found associated with pfam00271, pfam00176. The function of this domain is not known, but structurally it forms an alpha-beta fold in nature with a central beta-sheet flanked by helices and loops, the beta-sheet being mainly antiparallel and flanked by four alpha helices, among which the two longer helices exhibit a coiled-coil arrangement.
Statistics
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PSSM-Id: 432354
Aligned: 62 rows
Threshold Bit Score: 380.731
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4S20_K                  611 DIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASp------dQTEGfDDL------IKNCRE 678  Esc...
tigr:TERTU_4594         518 DVHVHVPFAAHSRTALQFQWFNDVLQCVEQQNPAAGPVHDKVVADVEDDLYS--------EAVLtEEL------ISQTRA 583 
Q21K39                  517 DVSVHVPCHPESDTAKQLFWYNDILNCVEQQNPASTAIHDKYWQQ--------------------DSLswgsadLAEIRE 576  Sac...
WP_013043747            579 TIRVHVPYLEASAIELLLRWHHEGLANIEHSLKGGNAYLQKFEGRIRELGPVyheqeaavLRGA-EKL------IAESQA 651  Cor...
WP_013662143            576 TVEIHIPYIKNSVQERLFQWYHHALNAFERTTSAGDKVNMAFKEPLHAFIT---------GQDDdKSL------LLEANA 640  Mar...
WP_014022011            579 KIRIYVPFLKGSPQEILARWFHEGLNAFEENIEGGNQIGELFGERLFELAMTsmk---hdIFADlESL------IRETAS 649  Cyc...
jgi:Oter_4527           619 TIRIHVPYLTGSATECVIEWYQRGLNAFEAPLHGGDAYRQEFRARLLALAAKyrg--geiDRAElDRL------VADTSA 690 
PRJNA63271:OPIT5_30475  672 TIRIHVPYVAGSAEECVVEWYHRGLDAFETSLHGGDEYRQRFRDRLLALVQAhgraghttGRAAlETL------VAETAG 745 
CCK81120                533 DIQIHVPYILGSVYEILARWYMDGLNLFAGNINGSHLIYEKFKPNLFDLFSRsaes-aavKAFVlEKL------IEETKA 605 
goetting:HRM2_40500     542 PIVIHVPYAHDSRQAVLARWYREGTGIFENNISGIHQIHRQFAARLADLSDLcdqa-gqvPYGAlDQL------IADTRT 614 
4S20_K                  679 QHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQ----DDRGDNMIVLTPSDHMlV 754  Esc...
tigr:TERTU_4594         584 QVAALQAEIQSGRDALLEMNSCRQPFADELAAGIADFEQDTP-QALVETASDLLNFHF----EATGDASFSLIPSDKMlI 658 
Q21K39                  577 ELAQLQLKIVEGRDALLELNSCRQPFADQLAQSIADFEQATP-EELVSEASELLQFHY----EQTFDGIFSLIPSDKMlI 651  Sac...
WP_013043747            652 FREKLEETLSQGQDKLIALNSFREDVSSELVQRIRDLDTSRTIDSYMGRMFDHYGVTV----DDIDERSFRLSPGHVF-T 726  Cor...
WP_013662143            641 FHDNLLKQMDEGRNRLLEMSSCRPDRAAELINQIND-EATQGLHDYIEQVTHAFNIYAdclnDAPDQSSWFLRPSSDMmV 719  Mar...
WP_014022011            650 YQRALKQTLANGRDRLLEMNSFRPKVAMELVDKIHEADKDLKLENYMSEVFEHFRVEM----EDLAPRTYWLRPSKAN-H 724  Cyc...
jgi:Oter_4527           691 FREVLARKLKQGRDRLLELASFNRATAESVIERVRAADADPRVRQVLLAVLEHFGVEV----KEHEAGDLALDPSRAY-L 765 
PRJNA63271:OPIT5_30475  746 FRKTLSQKLKQGRDRLLEINSFDAGVAARVIERIREEDTDPFLRRFLLALLDHFGVRV----KEDESGDVFLDPAHAY-V 820 
CCK81120                606 YCIKVDKKLAHGKNILLEMNSFKPESAKKIIDHITRTEKNNAFDDLLTMVLDHYGIEI----DFIDKTIFKLNSTTMT-D 680 
goetting:HRM2_40500     615 FAAETSKRLKSGRDKLLELNSFRPRKAEQLVKTICETDQDQSIDLFMAKIFKFYAISP----EPIMARTFRLEVFNSA-G 689 
4S20_K                  755 PDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPK 834  Esc...
tigr:TERTU_4594         659 PALPGIPPEGTEITFNRALASHREDLLFMSWDATFITGLWELLHHSDLGSASVATLPSKQLPAGHCLLEVCFDVVIQSRL 738 
Q21K39                  652 PALPGLPAEGVELTYDRDIANSREDLHFLTWDSPFIEGLWELLHHSELGSASVAMLPSRQLPAGHCLLEVCFDFMIQSPA 731  Sac...
WP_013043747            727 DSFPGLPDEGTTITFARETAIGREDIDFLTWDHPMVRGVIDLMLSSEHGNSCMAIWLDPGGAAPPIMIEAIYVLESVAPA 806  Cor...
WP_013662143            720 EALPGIDDDGKALMLNRRQASQREDVAFATWEHPLINMLMDEVQSFDSGKLTSAILPIAALPEGTVLLETMFVIEASAHP 799  Mar...
WP_014022011            725 TAFPSIPEKGISITFDRKRALSREDIDFISWDHPMVTGAIDMVLGMGTGAASFGRLKGTT--KTGILMEVIFVLETSGKE 802  Cyc...
jgi:Oter_4527           766 ESFPSVPAEGMLATFSRSRATAREDLRFLSADHPLMQDALDLLIDSPAGTAAFGTIVSD---QPNLLLEAVFVLETVADS 842 
PRJNA63271:OPIT5_30475  821 EAFPSIPRDGMLATFSRERAIAREDIRFLSADHPLVQDAIDLLTRSPAGSASFGIIRSD---TPNLLLEAVFVLEAVADS 897 
CCK81120                681 EKFPALTSLSNAMTFNRKTAIARDDIDFFSWDHPFVQQTFEYFITNDTGSCATALLNRQQ--GPGILLETIFILECIAPG 758 
goetting:HRM2_40500     690 VPFPGFKGDGMIVTFDRTVAVTRDDIVFLTWDHPMVTGAMELFLGSDHGNAAIAEVNGTG--KFEILLESVYTLECVAPR 767 
4S20_K                  835 QLQLNRFLPPTPVR-MLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAAR 913  Esc...
tigr:TERTU_4594         739 ATACLPFLTSHSVRtLVLDISDKDLSSLLPEEALQQNIQGVKKHLARDVVKSRKDEIGKWYEKAEAFAEQQQQTLLADAL 818 
Q21K39                  732 AKECLPFIQESSVRsLVLDVGENDLSGILPESALEANLQGVKKHLAREVIKSRKEAIPQWFKKAEDISVAKKSAVQAAAT 811  Sac...
WP_013043747            807 RLHVDRFLPPTPVR-ALVDMHGVNQSDLFSHEQLNQETRDEEVFRLKQNPELLQALVPEMLKSARLFAREEKSKILEQAM 885  Cor...
WP_013662143            800 RLKLAQSLPMTPIW-QLSDKNAKFLHSQFTADKWAEKLKGVPNRVAEQWVAALRKDLIELLQAHQLNAQELARPMVHEAK 878  Mar...
WP_014022011            803 GVYVDRFLPNTPLR-VVVNHLGEEVTDSYPVGLLNKQLVSGEITELIGNDRFVDEIFPEMIKTAEEIADQMKDKEIDSGL 881  Cyc...
jgi:Oter_4527           843 RWRVDQFLAPTPVR-VLIDLRGTDLTAERDARAVAREFEDADIHRFLERPGFDAPLLQRMLAAANGVAAARTGELKSEAL 921 
PRJNA63271:OPIT5_30475  898 RWQVDRFLAPTPVR-VLVDVRGRDLTGERDAATIAGEITDGTIQRFLERPGFNATLLRNLVSAATARAEARILDLKAAAA 976 
CCK81120                759 NLNMERYLMPHPIR-IIVDHEGRDTSLDNKFTSLSSKLKKDQSTWFMDMEPVKQVLIPSMIEKSVSIAENHCEKMIKKGQ 837 
goetting:HRM2_40500     768 ALHMNRFLARTPIR-TLVDHNLTNLSQDRSWALTAASLSTPARSWLGQFPEIKEQLLPELLAAGRRFSEQAAARVISRAK 846 
4S20_K                  914 NEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESL-DQAGWRLDALRLIV 970  Escherichia coli
tigr:TERTU_4594         819 EQARAHFEAEITRLRNLAHNNAAVGRDELVALEERRDGVCNALeKHAHLQLSAIRLIV 876 
Q21K39                  812 ERAQSFFEGEIKRLKTLKAKNPLIDDAEIALLEVKSQAVQHAInHAAHLQLSAIRLIV 869  Saccharophagus degradans ...
WP_013043747            886 KDAHSRLDSEAARLRELSKVNANVSDAEIEIAEKVITDVTRHI-AKAHLRLDAVRLIL 942  Coraliomargarita akajimensis
WP_013662143            879 EDYKHRWQSEINRLCELRTQNKSVSQEDIDLLETNLSEGLQRI-DEHQIRLDAIRIIL 935  Marinomonas mediterranea
WP_014022011            882 QYMNHTLDHEIGRLAYLYKRNNAIRPDEIRTALEQKNELAELI-TNARIRIDAIQLIr 938  Cyclobacterium marinum
jgi:Oter_4527           922 ARATAALDAEAQRLEDLRRLNDQVRPEEIELTRQQLQHTRTAI-EQARLRLDSIRLIV 978 
PRJNA63271:OPIT5_30475  977 ARAETTLAAGRQRLLDLQKLNDNVRPEEIALATEQIANTRAAI-DQARLRLDAIRLIV 1033
CCK81120                838 NRIKDILGKEITRLMQLQKINPDIRTAEIKLARNRMESLLKYL-DTSRLRMDAVRLIr 894 
goetting:HRM2_40500     847 AAVEKVVGGEAARLERLKRINPAIREDEIRRAKDEATTLVIHI-DQARLRLDSLRLIk 903 
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