3TIX


Conserved Protein Domain Family
SPOC_Chp1p

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cd21545: SPOC_Chp1p 
Click on image for an interactive view with Cn3D
SPOC (Spen paralog and ortholog C-terminal) domain found in Schizosaccharomyces pombe chromo domain-containing protein 1 (Chp1p) and similar proteins
Chp1p is a component of the kinetochore that plays a role in stabilizing microtubules and thus, allowing accurate chromosome segregation. It has a role in the RNA interference (RNAi) pathway which is important for heterochromatin formation and accurate chromosome segregation. Chp1p is also a member of the RNA-induced transcriptional silencing (RITS) complex, which is involved in the biosynthesis of dsRNA from primer siRNAs provided by the RNA-directed RNA polymerase (RDRC) complex. The C-terminal portion of Chp1p contains three domains: SPOC, II, and PIN domains. This model corresponds to the SPOC domain that is involved in developmental signaling and has also been proposed to be a phosphorylation binding module.
Statistics
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PSSM-Id: 439208
Aligned: 4 rows
Threshold Bit Score: 156.748
Created: 3-Apr-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ####                                  ####   ### ##  ##                 
3TIX_B         16 DYFRFVLRVGKSLYYAGELSFDISKLKAEtEHQQLLRSLVSCKQVDVLRFVTSQYLEVFGtCLTKVLSGSLCIRSDVDMT 95   Schizosacchar...
NP_593666     518 DYFRFVLRVGKSLYYAGELSFDISKLKAEtEHQQLLRSLVSCKQVDVLRFVTSQYLEVFGtCLTKVLSGSLCIRSDVDMT 597  fission yeast
Q10103        518 DYFRFVLRVGKSLYYAGELSFDISKLKAEtEHQQLLRSLVSCKQVDVLRFVTSQYLEVFGtCLTKVLSGSLCIRSDVDMT 597  Schizosacchar...
XP_002175039  636 DYWRFVLRSGKSLSFTGELELDLSKLKEEeENKPILQSLITKRQIDVVRFISTSHLELFGdCVKDIMQGNLYVRNDVDMN 715  Schizosacchar...
Feature 1          #  ## #    ## #                                     
3TIX_B         96 HFKNILNRGNGAGIVLGSNYTLLLFTEdNNALMNLYDCQgqsnSPFWMVIFEP 148  Schizosaccharomyces pombe 972h-
NP_593666     598 HFKNILNRGNGAGIVLGSNYTLLLFTEdNNALMNLYDCQgqsnSPFWMVIFEP 650  fission yeast
Q10103        598 HFKNILNRGNGAGIVLGSNYTLLLFTEdNNALMNLYDCQgqsnSPFWMVIFEP 650  Schizosaccharomyces pombe 972h-
XP_002175039  716 HFRNILVRSKGAGIVLEKEFSLLFFTSdNEPLMNMYKCSsgikSPFWIVLLEP 768  Schizosaccharomyces japonicus yFS275

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