6YXX,7AOI


Conserved Protein Domain Family
mt-LAF7-like

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cd23090: mt-LAF7-like 
Click on image for an interactive view with Cn3D
mitochondrial large subunit assembly factor 7 (mt-LAF7) and related proteins
mt-LAF7 is a Trypanosoma brucei mitochondrial large subunit (mt-LSU) assembly factor (mt-LAF) that plays a structural role in stabilizing a mt-LSU assembly intermediate (pre-mt-LSU); mt-LAFf7, along with mt-LAF8, is bound at the L7/12 stalk base to the unfolded rRNA H41/42. Mitochondrial ribosomes (mitoribosomes) are ribonucleoprotein complexes and consist of a large (mt-LSU) and small subunit (mt-SSU). They differ markedly in composition and architecture from their bacterial counterparts and between different eukaryotic lineages, and their biogenesis involves exchange of assembly factors by ribosomal proteins. An investigation of native assembly intermediates of the mt-LSU from T. brucei identified 28 assembly factors, some of which are homologous to bacterial and eukaryotic ribosome assembly factors. Mitochondrial biogenesis is biomedically important since mutations in mitoribosomal proteins, rRNAs, and assembly factors have been linked to a heterogeneous group of human multisystemic oxidative phosphorylation (OXPHOS) diseases and cancer development and progression.
Statistics
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PSSM-Id: 467868
Aligned: 12 rows
Threshold Bit Score: 229.653
Created: 27-Apr-2023
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
oligomerRNA binding
Conserved site includes 73 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:6YXX: Trypanosoma brucei mitoribosomal LSU native assembly intermediate (referred to as State A); mt-LAF-7 oligomer interface, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #### ######  #### ######  #                              ####       ####    ## 
6YXX_EG        5 KGGVGSFLMRRAAPKSIRQKYQTGPQFY-----------------------------KRKFFQFQKg-HHRLHRRISGVQ 54  Trypanosoma bru...
7AOI_XA        3 KGGVGSFLMRRAAPKSIRQKYQTGPQFY-----------------------------KRKFFQFQKg-HHRLHRRISGVQ 52  Trypanosoma brucei
AGG11492       5 RGGVGSFLLRRAAAKSVRQRHATGPQFS-----------------------------KRKEFRFPKg-YHQLHRRLTPGA 54  Paratrypanosoma...
CUG92983       4 KGGVGSFLTTKLAARSVRQRHSTGPQYY-----------------------------KRKFFTIQNkhHHQMHRRISGKK 54  Bodo saltans
EPY35843       5 KGGVGSFFLRRAAAKSVRQRHQTGPQYNkrkvfprfqagpvrpnrnsfsnfggmplrSASKGKNEKh-YHQLHRRDAPGR 83  Angomonas deanei
EPY24415       4 KGGVGSFLLRKAANQSVRQRHGTGPQFNrrkffpa---------------fmkkkrsPQSGSAPRKh-YHQLHKRDAPGM 67  Strigomonas cul...
KNH08885       2 LSSSKCFLKRLQARGSPFRSGGGKGFVArnntg--------------------svffRRKSFEMNGt-HKRMYKRIAGAP 60  Perkinsela sp. ...
RHW69701       5 KGGVGSFLMRRTAPKSIRQKYQTGPQFY-----------------------------KRKFFQFQKg-HHRLHRRISGVQ 54  Trypanosoma bru...
CCW64717       5 KGGVGSFLLRRSAPKSIRQRHLTGPQFN-----------------------------KRKFFNFPKg-HHRLYRRVAPMM 54 
XP_001682709   8 KGGVGSFLLRRTAAKSIRQKHFTGPQFY-----------------------------KRKTFNFPIg-HHQLHRRVAPAL 57 
CCW71879       5 KGGVGSFLLRRAAPKSVRQRHLTGPQFN-----------------------------KRKFFNFPKg-YHRLHRRVAPMM 54  Phytomonas sp. ...
GET88016       5 KGAVGSFLLRRTAAKSIRQKYFTGPQYY-----------------------------KRKTFNFPVg-HHQLHRRVAPAL 54  Leishmania tare...
Feature 1        #    ### ##     ##  ## ###     ##                                   ##     ###  
6YXX_EG       55 TGs--PTHQREYERFHHLp-GDVRTRPQFDFTFGet------------------------------raDRVMFAWRKRgD 101 Trypanosoma bru...
7AOI_XA       53 TGs--PTHQREYERFHHLp-GDVRTRPQFDFTFGet------------------------------raDRVMFAWRKRgD 99  Trypanosoma brucei
AGG11492      55 AQsasPTHQREYEWFSHLp-GDVRTAPEHDYTFNanp-----------------------------rvDKALFAWRKRgR 104 Paratrypanosoma...
CUG92983      55 FAd--PSQQPEHTYFSHLg-GDVARRPSKDYSFAnr-------------------------------qDKVLYEWKKRgD 100 Bodo saltans
EPY35843      84 QVa-sPTHQPEYTHHAHLt-GDVRTIPEKDYTFGvyvdksryfdvdredgs-psrqsdmdmgyqkeraDKLMYSWKSRgR 160 Angomonas deanei
EPY24415      68 QIa-sPTYQPEYLHVSHHggDVQRAAPAEDYTFGfttpapwtaaalgtaadgtapatagetryhrrrvDGVQYSWQPRgR 146 Strigomonas cul...
KNH08885      61 NS---SNMANPRERYRHLg-GDVLRKPEASFDFSer-------------------------------aDGLVYTWKARhR 105 Perkinsela sp. ...
RHW69701      55 TGs--PTHQREYERFHHLp-GDVRTRPQFDFTFGet------------------------------raDRVMFAWRKRgD 101 Trypanosoma bru...
CCW64717      55 QLtasPTHQLEHERFAHLp-GDVRRRPAEDFTFSpr-------------------------------vDRALYAWEKRgG 102
XP_001682709  58 QTg-sPTHQREHQRYAHLp-GDARTRPSEDFTFSrspsprvs-------------------grsrqrvDKAMYAWAKRgS 116
CCW71879      55 QAtssPTHKLEYERFAHLp-GDVRTRPAEDFTFTsr-------------------------------aDKALYAWKKHgK 102 Phytomonas sp. ...
GET88016      55 QTg-sPTHQLEYQRYAHLp-GDVRTQPSEDFTFSrstsphnr-------------------arsrqrvDKAMYAWAKRgS 113 Leishmania tare...
Feature 1             ##   ###       #          ######   #  ## ## #####
6YXX_EG      102 LQLYQMSGrgETFVCYRCGYPVRSqLVAVKaDNWDYRMCYRCYTNTVHrGMEND 155 Trypanosoma brucei brucei
7AOI_XA      100 LQLYQMSGrgETFVCYRCGYPVRSqLVAVKaDNWDYRMCYRCYTNTVHrGMEND 153 Trypanosoma brucei
AGG11492     105 LQLHQIGGktETFVCYRCGYPNRSkLVAICdDNWDFRMCYRCYVSTVRsGMEND 158 Paratrypanosoma confusum
CUG92983     101 FQVQQISGkaETFVCFRCGYPVRSnLQVIKnENWDWRMCYPCYQRVVQtGMERD 154 Bodo saltans
EPY35843     161 LSLHKVQKr-ETFVCYYCGYPTKSsLMAVVdDNWDYRMCYRCYNNVCRlGLEEH 213 Angomonas deanei
EPY24415     147 LHLHKVEKr-ETYVCYRCGYPVRStLVAVCdDNWDFRMCYSCYSAVRRlGLENN 199 Strigomonas culicis
KNH08885     106 LQLHQFNSs-EIFVCFHCGYPVRSaLVAVKeENWDFRMCYSCYCDVVNsGLEDV 158 Perkinsela sp. CCAP 1560/4
RHW69701     102 LQLYQMSGrgETFVCYRCGYPVRSqLVAVKaDNWDYRMCYRCYTNTVHrGMEND 155 Trypanosoma brucei equiperdum
CCW64717     103 LQLYQMGGkkEIFVCYRCGYPVSSrLVAIReDNWDYRMCYNCYTSVMVkGMENL 156
XP_001682709 117 LQLYQMGGkrETFACYRCGYPVRSaLVAIKdDNWDYRMCYNCYTKTVDtGMERN 170
CCW71879     103 LQLYQIGGkrEVFVCYRCGYPVSSrLVAIReDNWDYRMCYNCYTSVMVkGMENL 156 Phytomonas sp. isolate Hart1
GET88016     114 LQLYQMGGkrETFVCYRCGYPVRSaLVAIKdDNWDYRMCYNCYTRTVDtGMERN 167 Leishmania tarentolae

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