Conserved Protein Domain Family
PBP1_GalR

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cd01544: PBP1_GalR 
ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism
Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar binding of ABC-type transport systems.
Statistics
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PSSM-Id: 380486
Aligned: 153 rows
Threshold Bit Score: 222.398
Created: 1-Jul-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligandputative dimer
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the LacI family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      ##  #                                         #                
AAU94930   34 HIAVLTVFSEIREasDAYWRQIYLSIEQNAqdQNIIVDEIirinqGINIADFA---TYDAIIILGDMTqk--aVNQLQKI 108 Leuconostoc mesent...
KRM09079   58 SIAIFFGITPKEEleDVYYNGLRKSLKSSAekLNMQISFYn---nVSDLAPLAn--PIDGFIAVGNFKne--tLKVLNNL 130 Lactobacillus conc...
ADU26320   58 RVALLYWLTENEEleDIYYKQIRMELETKFqdYNISMRRYd---kEEGIGAIDp--ETDAFLIVGRFEkq--eFEKITSI 130 Ethanoligenens har...
CPS06079   15 TIALLYRVNHEEQlqDEYFTSLKQALISTVeaESLQMKTF-----YDADDLIKhasLFQGFIGVGAAPienatLKKLHEV 89  Chlamydia trachomatis
KRM27625   58 RVAVFFWITAQEEldDVYFNTLKRSLQFYGktYGLSLEFFe---kGQLDAAQVa--DFDGFIAVGAFNqt--eRAILEQI 130 Lactobacillus harb...
CCI87068   59 NIALLYRVNGGEHleDEYFALLKKELKKVCenRQVAISTF-----TDIHELISeagMYQGFIGVGTAEltyadLLKLKQA 133 Lactobacillus gige...
KOA64631   59 DIAVLDAIPSDEElsNAYYSELRSTLIATAq-QMHITLLFy----TDINKLIDnstQYDGFVSIGPELhsyesLERLHEV 133 Bifidobacterium br...
KRL45131   58 DIGLFYWLTPEEDlqDTYFEAMRECLEEHAnkARMRLHIYe---hGTDIQAIQe--KLDGFLAMGNFTae--eLDALSAL 130 Lactobacillus mani...
EIT88944   59 DIAILDTSSSAETleDSYFDALKETAATVMk-KYRMRSTVf----TRVDDLIAdgsDLDGFISIGAANfngdeLNALHEG 133 Parascardovia dent...
ABE00942  108 AIAVLDAPPSGEElqDAYFADLRKVLAERAesLELDQLTFi----RSIHELTEratEFDGFITVGATVfpeadLRALHMV 183 Bifidobacterium bi...
Feature 1            #            #                                            #              
AAU94930  109 NERIVLVDaktryetIDSVNPELrLMTTRILDEFYqaGRRHIGFIGGvndlleldgsstlavEDVRSEIYRNWaeeh--- 185 Leuconostoc mesent...
KRM09079  131 SHNSIFIDsnpnpafFSSVQPDIeAITIDAIDQFRhcGYRNIGFIGGsyfnpn----tnlpeMDQRERIFRNYlfelgl- 205 Lactobacillus conc...
ADU26320  131 SRLGVIIDtasndifFDSVRPNLsLMIRQMIDHFLaqGHRKIGLICGhdygqq----krvetLDIRENAFREYmeelg-- 204 Ethanoligenens har...
CPS06079   90 LPNGVFVDtnpapelFDSIRPNLtLTVKNAIDLFLdkGYQRIGFIGGigpkh-----dhiqeVDVRATAFAEYikvrg-- 162 Chlamydia trachomatis
KRM27625  131 SNNGVFIDsnprighFNSVQPDFeQIISEALALCQtaGMTKVGFIGGqylnpd----tnqfePDSRENIFRNYasragl- 205 Lactobacillus harb...
CCI87068  134 LPHGVFLDidpapqlFNSVKPNLvLTVQDAVDKLIeaGHQRLGFIGAesfnl-----dhvaqRDEREITFEEYtkfrh-- 206 Lactobacillus gige...
KOA64631  134 LPHGVFIDvnpapnlFSSVQPDLpQTILDALSEARarGMTRIGFIGGegrmmg----tyeypEDIRTMAYRDWcerlg-- 207 Bifidobacterium br...
KRL45131  131 SPYGVFLDsnpdptrFHAVLPNLsQITRSAIDAFVkaGITRIGFIGPtyfnpn----thqeePDIRERIFEQYmqqlgl- 205 Lactobacillus mani...
EIT88944  134 IPYGVFLDtnpaptlFDSAQPDFnQIILDALDQFQaaGMKRIGFIGGigrimg----fheypEDPRSLAFRNWtnrlgid 209 Parascardovia dent...
ABE00942  184 LPHGVCIDtnpaprlFDSVCPDLsQTMLDALDAMIaaGRSHIAFLGGvgsimg----mhdypEDIRELSFRQWaahlgl- 258 Bifidobacterium bi...
Feature 1                 #                                                          #        
AAU94930  186 --qmspHFYTGPWh-aDTGMQGAISLLRee----hSIDALLVASDPIAIGAINALKSENlePGIDIDVVSFDNVelSSYL 258 Leuconostoc mesent...
KRM09079  206 -lqdkyIFSTGHFs-vNTGYELGQRVIAqld--hdFPDGFFIASDPIAVGVLQAFNEHGitVPKDTSIISVNNIdiSKYV 281 Lactobacillus conc...
ADU26320  205 -ilnekYIFRSATgsvSGGYQCALNAIEess--gdLPTAFCVASDPLAVGTLQAFHEKGiaIPQRVSFFSIDDVivSKYV 281 Ethanoligenens har...
CPS06079  163 -ksdelMFVNGPFs-vANGYKLGKEVLAkck--nkLPDAFLIASDTLAVGVLQAFNENNvnVPKDTAILSINNSnvVKYV 238 Chlamydia trachomatis
KRM27625  206 -ldeklIHAHDSFs-vTTGQVLGKQIAEnts-acpLPNAFIVAADPIAVGVLQAFSAAGilVPRDTSLLSINNIqmAKYT 282 Lactobacillus harb...
CCI87068  207 -vteakIYSQGIVs-vANGYQLAKRALAdk---gqLPDAFIVASDTLSVGVLQAFNEAGikIPEQTAIISINNSeiARYV 281 Lactobacillus gige...
KOA64631  208 -letagLIFTGGQvsvETGRKHGETIVAklg--snMPDCFIVATDSLAVGVIQAFTKAGilVPRDVSIISINNQsiAQYI 284 Bifidobacterium br...
KRL45131  206 -wepefVFSHGNVs-vTNGKVLAQQALDkfg-pdhLPAGLFIGSDPLAVGVLQVFNNAGvvVPRDTALISVNNLelAKYL 282 Lactobacillus mani...
EIT88944  210 tdrdglIYASGPFs-tSNGRALGEKVVAdlr--gsLPDAFIVAADTLAVGVLQAFASAGilVPRDVSLVSVNDLpiAQYT 286 Parascardovia dent...
ABE00942  259 -etdglVYSSGTFt-vENGYRLAEQLVAdhreagsMPDGLIVAADVLAVGALQALNALRveVPDELAVVSVNNQsiARYT 336 Bifidobacterium bi...
Feature 1             #                                       
AAU94930  259 VPALTTVDLNPAALGKTALEQayel-andeRDWTVWATIPGNLKYRET 305 Leuconostoc mesenteroides
KRM09079  282 SPPLTTYDINLNELSRTAIELlnnn-llthNKSHRRILIHSDLVIRRS 328 Lactobacillus concavus DSM 17758
ADU26320  282 SPPLTTFHIDIPFMCQTALKLlqer-lanpNMPQETILLNGTPVYRKS 328 Ethanoligenens harbinense YUAN-3
CPS06079  239 SPPLSSYNIDQQEMIDMALNMltnl-iiqpNRAHIDVNMNTNLVVRKS 285 Chlamydia trachomatis
KRM27625  283 SPPLSTFAINQDELCRAALARlidimenpeKQIYQRTLVSAYLVARGS 330 Lactobacillus harbinensis DSM 16991
CCI87068  282 YPQLSTYNIDQAALSDLALDVllae-iknsRRPLIHLTVNTKLIKRKS 328 Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85
KOA64631  285 SPPLTTYAIDQTALARNALLMlsqs-isfnDDITCHTMLSTKLVARES 331 Bifidobacterium breve MCC 1605
KRL45131  283 SPPLSTFNISLDDETRMAVSMlvdalagkrTAPKFVCHMGAELVLRQS 330 Lactobacillus manihotivorans DSM 13343 = JCM 12514
EIT88944  287 SPALSSYSIDQTELVETAVSLladg-lmrhREVKQHVYQTATLRVRES 333 Parascardovia denticolens IPLA 20019
ABE00942  337 SPPLSSYAIDQRELARMAFSTlidg-lkheRRVRRHILLTTELVPRAS 383 Bifidobacterium bifidum NCIMB 41171

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