Conserved Protein Domain Family
LbH_Dynactin_5

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cd03359: LbH_Dynactin_5 
Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Statistics
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PSSM-Id: 100049
Aligned: 28 rows
Threshold Bit Score: 173.169
Created: 19-Jul-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAH04191      13 YIETASGNKVSRQSVlCGSqNIVLNGkTIVMndCIIRGDLa-------------------------nVRVGRHCVVKSRS 67  human
CAD71086      10 YIETDTGNKVARKATlVGTqNIMLGGkTVIQpdVMIRGDLartippaqsa--------sggpanntaVAIGRYCFLSRGC 81  Neurospora crassa
XP_501835     11 YVITESGNRISRKAAlSGLqNIVLGGkTVIDhgSKIRGDLqrpgs------------------tapiIAIGRYCIISTQV 72  Yarrowia lipoly...
XP_453674      3 WIETGQGTRISKQANvLGPdKIVLAGqCVISpkCTLEGNVllmenydksasa----sakrknhnrytISVGRYCILEPGV 78  Kluyveromyces l...
XP_457356      3 WIETTSGNRISKKSKiFGSnSILINGnCTINdeVLLQGDVriagk------------------qqatIQIGKCCYLGTGA 64  Debaryomyces ha...
XP_001547559  10 YIETDTGNKVSRRSQiIGTtNIILGGkTVIQaeVIIRGDLlrtlppstq---------gekagnavaVAIGRYCFFSRGC 80  Botryotinia fuc...
XP_001032435  42 YYETQTGNKLCKKNLiRGSdNIFIYGkVIMQqkNIIRGDLg-------------------------rINLGKYLILCEGV 96  Tetrahymena the...
XP_001263254  10 YIETDTGNKISRRSQiHGTqHIILGGkTVIQadAVIRGDLyrssssstssasadgsrpsqpstpsvaITIGRYSYISRQA 89  Neosartorya fis...
EAT82019      15 YIETDSGNKVSRRSAiTGTaNITLGGrTVIMadVQLRGDLhptrstpsq---------sgkevtptsISIGRCTVISTGS 85  Phaeosphaeria n...
XP_001384200   4 WIETSSGNRISRSAHiSGSdRIVINGnATIHpgVQIHGDVqllanks--------------stdtttATLGKFCYLRPNC 69  Pichia stipitis...
AAH04191      68 VIRPP----FKKFSKGva---------ffPLHIGDhVFIEEdCVVNAAQIGSyVHVGKNCVIGRRCVLKDCCKILDNTVL 134 human
CAD71086      82 CLRPP----GRMYKGVft---------fmPLRLGDhVFVGPgTVVQAAQIGNhVHIGGKVVIGEFAIIKDYVKVLDGSVV 148 Neurospora crassa
XP_501835     73 TVEPP----CKDEAKEny----------yPVRIGDyVYIGDnSVTQAVQIGSnVEIGDNCEIGKFCIIKDCVIVDPGSVI 138 Yarrowia lipoly...
XP_453674     79 RVKPP----VVGYRKSeddlnsgkvaihsDLLMNSyVWIGQdCKVYCKKLGSrVVLGANTHLNRCCEIGDVVIIDDNLVV 154 Kluyveromyces l...
XP_457356     65 KITPP----VLKYEDEesi--------hgPLLIGGyTIIGKnSVVRLANIGSrVLVELGCDLGNLSIVYDCCLIRSGTII 132 Debaryomyces ha...
XP_001547559  81 ELRPP----GKIYRGTfs---------yfPLKIGDhVYVGPgSIIEAAMLGNhVNIGANVVVGKFVIVKDFVKILEGTVV 147 Botryotinia fuc...
XP_001032435  97 TLRPSy---QVQANDQik---------ysHITIGDyVIIDSnSIIQAQKIGSnVHIGKNCIIGHRANISDNVKILDDTII 164 Tetrahymena the...
XP_001263254  90 VLRPP----SRLHRGLht---------fyPLKIGDhVFVGErAVVEAATVGNhVHIGREAVVGSMAILKDFAYVLDGAVV 156 Neosartorya fis...
EAT82019      86 VIKPP----CRISRGQvh---------yyPMKIGDnVFVGPgCTIQAISISShVHIGEKVTINQFAIIKENVKILPNTVI 152 Phaeosphaeria n...
XP_001384200  70 QIIPPvlqeCSDSDSTty---------hgPVTIGAyTIIGSnTVVKSANVGNrVLIEDDCVLENLSIIYECCVIRKGTVV 140 Pichia stipitis...
AAH04191     135 PPETVVPPFTVFSGCPGlfs----gelPECTQELMID-----VTKSYY 173 human
CAD71086     149 PPNMVIPSFSIVAGQPAri-------iGEIPEGGIEAf----ELRDLY 185 Neurospora crassa
XP_501835    139 PPRTVCAPFTRWAGVPAvei----evlSESTAEMVQL-----RNRQRY 177 Yarrowia lipolytica CLIB122
XP_453674    155 PERYKIPSYSRVSRHPDvatsivvkplPPMFAPVIEN-----WCQKRY 197 Kluyveromyces lactis NRRL Y-1140
XP_457356    133 PPKMVIPPFSDVSGVPGidfc--ikdlSNSYKKLIEI-----EARELQ 173 Debaryomyces hansenii CBS767
XP_001547559 148 PPNMVIPSFSVVGGCPGrv-------vGEVAEGEIEGm----DLREIY 184 Botryotinia fuckeliana B05.10
XP_001032435 165 PPDTVIPPYTVYGGKPAryi----aelPETVSYIHRE-----QAIKYY 203 Tetrahymena thermophila SB210
XP_001263254 157 PAGMVVPSWCVVGGAPAri-------vGEVGEGYGVEgaeggMARERY 197 Neosartorya fischeri NRRL 181
EAT82019     153 PANMVIASGSVVGGRPArv-------iGEVGEGWGVSgg--gGTGGGL 191 Phaeosphaeria nodorum SN15
XP_001384200 141 PPKTIIPPYSEVSGVPGkdfr--isslNSCYKRLIEI-----EAKELQ 181 Pichia stipitis CBS 6054
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