Conserved Protein Domain Family
HAD_PGPase

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cd04303: HAD_PGPase 
phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ
Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Statistics
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PSSM-Id: 319799
Aligned: 9 rows
Threshold Bit Score: 274.619
Created: 3-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #####                                                                       
NP_844622        6 YIVFDFDGTLVDSQNIFVpiynqIAKKHGYKTvreeeieyLRKLTMPERCKqldvPLYKLPILAlefyklyqpaIKDLIL 85  Bacillus anth...
Q55039           3 AIIFDFDGTLVDSLPTVVaianaHAPDFGYDPiderdyaqLRQWSSRTIVRraglSPWQQARLLqrvqrqlgdcLPALQL 82  Synechococcus...
NP_059827        9 LIIFDFDGTLADSGAWILsalreMSERHRFVTpsdtqieyLRGLSICQVLRwlrvPVWRIPLIVkdlr--klarEATFDI 86  Agrobacterium...
NP_420453       35 LVIFDFDGTLADSAAWMMravnpMARRYGFKTvtedeiemLRGRSTREVIRylgvSPWKLPLIAragkklmaadAHTIPL 114 Caulobacter c...
CAJ47810         5 LIAFDFDGTLADTLPWMEsilhdVAEKFGFRKpdaqeraqLRQHNAFDIMKqlgiPIWKAPAILgfvrqsmeeaVPKVAL 84  Bordetella av...
CAM85069        10 AIIFDLDGTLADSFHFFLsvlnqLSAKYKFKSvelheveqYKHLSPKEIMKemnvSRWKLPWIAkdfirlmkerDQEVYM 89  Acinetobacter...
NP_771344       27 LAIFDLDGTLADSFPWFLrtindVADRFGFRRvadediegLRHASSREILSrlevPLWKLPAIArharrlkaeaASEISL 106 Bradyrhizobiu...
NP_638964        4 LIIFDFDGTLADSFGFFLstqrtLAARHGFRAaeahevdaARRLTTRELLKhsglRSWRVPLVAadfir-lmraAPPPAL 82  Xanthomonas c...
LANL:BF38_3436   4 YIVFDFDGTLVDSQNIFVpiynqIAKKHGYKTvreeeieyLRKLTMPERCKqldvPLYKLPILAlefyklyqpaIKDLIL 83  Bacillus thur...
Feature 1                               ##                                #                     ## 
NP_844622       86 FHGMKDVLDELhkeGYGIAVISSNSeEHIRAFLHnn--dIENIQEVycs-knLFGKDKMIKRFlkskkitekdMLYVGDE 162 Bacillus anth...
Q55039          83 FPGVADLLAQLrsrSLCLGILSSNSrQNIEAFLQrq--gLRSLFSVvqagtpILSKRRALSQLvaregwqpaaVMYVGDE 160 Synechococcus...
NP_059827       87 FPRTEKVLLHLedqGVELAILSSNStENIRRVLGp----LDSYFTYiegsspLFGKGKRINKIlrrckksrneVLLVGDE 162 Agrobacterium...
NP_420453      115 FPETEKMLRALhaaGVKIAVVSSNSeTVIRRVLGeelgnLISLYACga---sLFGKARKFRQVtrqgv-ardkIICIGDE 190 Caulobacter c...
CAJ47810        85 FPGIDAMLRALhasGARLAVVSSNStANVQRVLGpelsaLIHDFACgs---dLFGKPAKLEHLlratqteaaqAILIGDE 161 Bordetella av...
CAM85069        90 FEGMRDHLMELhkrGYTLAIITSNSkENCQSILGk---eLCELFSHidggssIFGKAKRIKRVlnilnlnkeqAIYVGDQ 166 Acinetobacter...
NP_771344      107 FAGVEAMLRTLagnGVQLALVTSDSeANAREKLGea-aaLFAHFDCsa---sIFGKPAKFRRVirrasveldrVIAIGDE 182 Bradyrhizobiu...
NP_638964       83 FPGVDAALRALhasGTRLALVSSNSvDNVQRALGa---eLSALFAVfeggahLLGKHRALRRVlratghtaaqAIYVGDQ 159 Xanthomonas c...
LANL:BF38_3436  84 FHGMKDVLDELhkeGYGIAVISSNSeEHIRAFLHnn--gIENIQEVycs-knLFGKDKMIKRFlkskkitekdMLYVGDE 160 Bacillus thur...
Feature 1           ##                                         
NP_844622      163 QRDVAACKKagvNVIWVSWGYDvietvkkdaPDYMVNTPMEIVQ 206 Bacillus anthracis str. Ames
Q55039         161 TRDVEAARQvglIAVAVTWGFNdrqslvaacPDWLLETPSDLLQ 204 Synechococcus elongatus PCC 7942
NP_059827      163 VRDIEAAKSqniASAGVTWGYAkrealaysnPTHILEDIEDLID 206 Agrobacterium tumefaciens
NP_420453      191 TRDIEAARAvglDCGAVGWGYAkpsilaqhgPTVSFNSMSEIIS 234 Caulobacter crescentus CB15
CAJ47810       162 IRDIEAARKvgvASGIVAWGYNreqvlreqaPDFVFTDVQDLAR 205 Bordetella avium 197N
CAM85069       167 TTDGEAAHKagiDFAAVGWGYTsaeklktiqPKVVLTDLATMKE 210 Acinetobacter baumannii AYE
NP_771344      183 VRDIEAARAvgiACGAVSWGYAapaalralaPDHMFAQMEDIAE 226 Bradyrhizobium japonicum USDA 110
NP_638964      160 VADWEAAQVlglPFAAVAWGYAhpdvfmqlpNTHLIEEVEGLIA 203 Xanthomonas campestris pv. campestris str. ATCC 3...
LANL:BF38_3436 161 QRDVAACKKagvNVIWVSWGYDvietvkkdaPDYMVNTPMEIVQ 204 Bacillus thuringiensis

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