2DAQ


Conserved Protein Domain Family
PWWP_NSD_rpt2

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cd05838: PWWP_NSD_rpt2 
Click on image for an interactive view with Cn3D
second PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins
The nuclear receptor binding SET domain (NSD) protein family consists of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising in suppressing cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they play nonredundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). This model corresponds to the second PWWP domain. The family also includes Drosophila melanogaster maternal-effect sterile 4 (dMes4) that may act as a histone-lysine N-methyltransferase required for wing morphogenesis. The PWWP domain specifically recognizes DNA and histone methylated lysines.
Statistics
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PSSM-Id: 438963
Aligned: 46 rows
Threshold Bit Score: 109.252
Created: 27-Nov-2007
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:putative methyl-histone binding site [polypeptide binding site]
Evidence:
  • Comment:the aromatic residues form the three-walled methyl-lysine cage that directly participate in histone methylated lysine binding and recognition.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     #  #                            #                                   
2DAQ_A         10 HYKQIVWVKLGnYRWWPAEICNPRSVPlniqg-lkhdlGDFPVFFFGSHDYYWVHq-GRVFPYVEGdksfae------gq 81   human
KPJ00854      328 GYEDVVWHKLGsCPWWPARVLAPGAVPsclls-rshtpHQWPLKYYGTENHSWGDs-ARMCLFLPShtaal--------- 396  Asian swallow...
XP_004989619  885 TEQDIVWYKLGqHRFWPARILEHTQIPealrs-krppgICFALNFFGTNEVSWGRh-DACIRWMRGdeksrf------st 956  Salpingoeca r...
XP_015919381 1226 RYNDIVWARVCdFQWWPAEIVKTCDLPnnvqe-vphsiGEFPVKFFGTEEYFWINs-RRAYPFVYKkisseekvehkfkk 1303 common house ...
XP_001747378  578 MIHDVVWAKYGsYRWWPAVILSATEYPercgq--spaeGNFLVKFLGSNDVAWVGh-ESIIPFSNGdqknsyft---rnl 651  Monosiga brev...
VDM34105      560 RYAQVVWVKVHgCRWWPCEIIHSRNAPlniys-lkhsdGEFVIHFIGSNEYGWVHr-CQTFPFECAlgsllaaev-snav 636  Hydatigera ta...
KAA3678233    306 RYAQIVWAKVMhFRWWPCEIIHARNAPiniln-mshpeGTFPVHFLGSDEYQWVSr-GSVLPYELGlktsavkd--nhgt 381  Paragonimus w...
XP_014144721    9 LVDDVVFAKLGnFRWWPAKILDRDNLAdnmer-ktrtnACVPVYFFGSHDMSWMPc-NHMTSYRSDigct---------- 76   Sphaeroforma ...
GAV05823      725 MVLDIVWFKSGaHRCWPCQILPSNICPknvqs--rapeGTFIMRYLGTTDYGFATs-SEVLPFEIMdrrwvq-------h 794  Ramazzottius ...
PRW58326      321 PGGKVVWAKVGsSPWWPAKTLDPQRDPsyppdadpprpTSIPIRLFGTHDFQWIGskRALTDWEEGfaqfs--------g 392  Chlorella sor...
Feature 1                                
2DAQ_A         82 tsinKTFKKALEEAAKRFQELKA 104  human
KPJ00854      397 rsrdDTLQRAMLDACDDYIAVYL 419  Asian swallowtail
XP_004989619  957 srgkPAFLHALQEAALAYDAVQA 979  Salpingoeca rosetta
XP_015919381 1304 fipnPYFENALKLAMSATMNKKA 1326 common house spider
XP_001747378  652 kaakKSFQEAVTLALDLFTERKQ 674  Monosiga brevicollis MX1
VDM34105      637 apldKAFGRALFEAPQVHQLYVS 659  Hydatigera taeniaeformis
KAA3678233    382 ksvdKAFTRALKRAPNAHQLYVN 404  Paragonimus westermani
XP_014144721   77 akknGAFSRALVETEAHIVEVGL 99   Sphaeroforma arctica JP610
GAV05823      795 pektRQFAAGLAEARKFTIELNV 817  Ramazzottius varieornatus
PRW58326      393 ecdqQPFKAAVAEAQAYKATGQL 415  Chlorella sorokiniana

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