Conserved Protein Domain Family
IgI_2_Necl-3

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cd05884: IgI_2_Necl-3 
Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3); member of the I-set of Ig superfamily domains
The members here are composed of the second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3; also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 through Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Statistics
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PSSM-Id: 409467
Aligned: 6 rows
Threshold Bit Score: 188.983
Created: 11-Jan-2008
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      ####                                                                           
Q6DJ83    120 VLGVPENPHISGFTSPVMEGDTIQLTCKSSGSKPAADIRWFKNDQEITDVQKIQQQDsngkTFTVTSSLVFQGDRKDDGA 199 western clawed frog
XP_416672  12 VLGVPEKPQITGFTSPVMEGERMQLTCKTSGSKPAADIRWFKNDKEVKDVKYLKEEDanrkTFTVSSTMDFLADRNDDGA 91  chicken
CAH56314   16 VLGVPEKPQISGFSSPVMEGDLMQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDanrkTFTVSSTLDFRVDRSDDGV 95  human
AAN16368  122 VLGVPEKPQISGFSSPVMEGDLMQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKKEDanrkTFTVSSTLDFRVDRSDDGV 201 human
NP_956958 135 VLGVPKKPEINGLTKPVLEGDHITLTCVTSGSKPAADVRWFKNEMEVKGAKEVNASGk---TFTVKSSLRLHVNRDDDGV 211 zebrafish
AAI52657  135 VLGVPKKPEINGLTKPVLEGDHITLTCVTSGSKPAADVRWFKNEMEVKGAKEVNASGk---TFTVKSSLRLHVNRDDDGV 211
Feature 1                             
Q6DJ83    200 VIRCRVDHESLTSTPQIAKQVLEI 223 western clawed frog
XP_416672  92 VISCRVDHESLNSTPQIAMQVLEI 115 chicken
CAH56314   96 AVICRVDHESLNATPQVAMQVLEI 119 human
AAN16368  202 AVICRVDHESLNTTPQVAMQVLEI 225 human
NP_956958 212 AYTCRVDHVALTATHEETTQVLEV 235 zebrafish
AAI52657  212 AYTCRVDHVALTATHEETTQVLEV 235

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