1ZVV,1SXG,3OQM,2HSG,1SXG,2O20,1RZR


Conserved Protein Domain Family
PBP1_CcpA

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cd06298: PBP1_CcpA 
Click on image for an interactive view with Cn3D
ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation
Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Statistics
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PSSM-Id: 380521
Aligned: 19 rows
Threshold Bit Score: 351.208
Created: 16-Feb-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:effector binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           #                                                         
1ZVV_G     62 TVGVIIPDIsNIFYAELARGIEDIAs--mYKYNIILSNSDqn---qDKQLHLLNNMLGKQVDGIIFMsgnvTEEHVEELK 136 Bacillus subtilis
KEO84480   62 SIGVILPDVsDLFHAEVLRGIEDIAt--mYQYHIILTNSDar---eDREVDLVGTMWEKQVDGLIFIsekiTPKIVKTFE 136 Tumebacillus sp. NFB
OAM70280   65 YIGVLLPDItNPYYSSLALGIDDIAn--mYEYNIILANADp-----EHDAAGVESLIMKQVDGIIFIgnsiSQEARQKIS 137 Aerococcus urinae
CRH93681   12 TVGVVIPNIaNAYYATLAKGIDDIAe--mYKYNIILANSDen---dDKEINVVNTLFSKQVDGIIFMgyhlTDKIRAEFS 86  Chlamydia trachomatis
AMC09168   63 NVGLIVPTCsRASVSEMIDGVADIAd--kYRYSVFLNVTHne---nDIATNVWQNMIASQVDGVLMMadklSDDEIERLA 137 Turicibacter sp. H121
Q48544     65 TVGLIVPDLtNLYFAELSKGIDDIAv--lYKYNIIISSVEnr---lMKEDAVIQGLLNKQVDGVIYMsnklSEEAAEAFK 139 Lactobacillus delb...
CCY07476   63 TVAVVIPELsRASVAEMIQGIDDAAk--kFGYQIRLFINKd----vENEKDLWGEVIASSVDGILFMndemTREVYQLAE 136 Coprobacillus sp. ...
SEV87627   62 TVGVIIPDIsSLYYSALVRGLDDVAe--mYQYQTIITNTDfn---pEAERDALFNFMSKQVDGIIYLggilNEDTLKDIE 136 Jeotgalicoccus sp....
CDC69199   69 TVAVVVPELtRSSIAGMVDGIAATAirrgYLIRLFVNNSSnsenpvSEEQELWRTVMSSGVDGILYIndeiADEYLEIIK 148 Staphylococcus sp....
SDB85783   84 TIGIVMPDVtNLYYAELTRGINDVAn--mYHYDVLLTNTDdd---pVRDVLAINSLESKQVDGIIFMgnelDQGVRKTID 158 Leuconostocaceae b...
Feature 1                                                                                     
1ZVV_G    137 KsPVPVVLAAsiestnqiPSVTIDYEQAAFDAVQSLIdsGHKNIAFVSGtleepinHAKKVKGYKRALTesglpvrdsYI 216 Bacillus subtilis
KEO84480  137 SaQLPVVLCAtedpehriPSVAIDNKQAGTDATRYFLnlGVDKIVFLGGpts-qpvTMERLAGYEKALAdaghefnpaYV 215 Tumebacillus sp. NFB
OAM70280  138 AaGRPCVFTDlidpeatmPTINIDVEDAYYQVTKDFLanGKKRIALVGSdqgfkvsQSRQLQGYEKALTeaghavnedLL 217 Aerococcus urinae
CRH93681   87 RsRTPIVLAGtvdlehqlPSVNIDYGQAAKDVVNLLAk-NNKKIAFVSGplvdeinGKIRLSGYKEALQskglefnegLI 165 Chlamydia trachomatis
AMC09168  138 NdTVPTVLLSvkdldgrlPAVLIDYELAAYEATKKLIenGNKDIAFITSssy-yamNDLKEQGYRRALAeag---lepRI 213 Turicibacter sp. H121
Q48544    140 RtDTPVVLAGtvsdnlefPSVNIDYKKADTEALNLLLndGKKKLALIVGdkeasinRNYRIPAFEKFVAdnel--egcEI 217 Lactobacillus delb...
CCY07476  137 FsPVPIVFVNalskkdtiGSVCVDYEECAYDITTRMIkkGNKNIVFVGTehk-ytlNEMKQKGYTRAMEdng---ltpKY 212 Coprobacillus sp. ...
SEV87627  137 NtSIPVVLCGtsehddkfASVNIDVEAAMDTVIQDFIdkGHKKCAFVKGyys-eqlMYHFERGIRRSFErnnlefkdeWV 215 Jeotgalicoccus sp....
CDC69199  149 EsSVSVVLTNtvcsdpeiPSVAIDYKKAAYEMTKEMIerGNKTIWIISTikk-yavNDLKVQGYEMAMKeagl--eprII 225 Staphylococcus sp....
SDB85783  159 AlNIPVVLAGcvdaqqklPSVNIDYIDAFYEITASLLrhGHENVALVMGsldeainRDYRLAGYTKALNevgrqvdekLL 238 Leuconostocaceae b...
Feature 1                                                                                    #
1ZVV_G    217 VEGDYt-YDSGIEAVEKLLEedekptAIFVgTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTrlstmvRPQLTSVVQPMY 295 Bacillus subtilis
KEO84480  216 IHARDshYQAGYDVSNEFLNsglkadAVVAtSDELVLGFLNAVRDRGGKAPDDVMLLSFENTrlttivRPELTTIAQPTY 295 Tumebacillus sp. NFB
OAM70280  218 IAAKSpsYDSGYALYETFTEie--adAAIAtDDTIAIGLLNALLDNGVKVPEEVEIMASDNSsivnmsRPELSSIAPPIY 295 Aerococcus urinae
CRH93681  166 FESKYk-YEEGYALAERLLNag--atAAYVaEDEIAAGLLNGISDRGVKVPEEFEIVTSDDSlvtkftRPNLTSISQPLY 242 Chlamydia trachomatis
AMC09168  214 LGLYNk-FENSLEAFKEFFAnnaapdAALAvRDSVAVMFMNAAIEHGISVPNDLEIIGFQNTkyaimsRPQLSTINIPTY 292 Turicibacter sp. H121
Q48544    218 FDNIKd-YSDGYNLYPELAKkg--inGAIItKDVSSVGLLNSALDRGAKVPEDFEIITASATqiasvvRPALTTIKQPLY 294 Lactobacillus delb...
CCY07476  213 LYTSGd-IRKNELFFNEILErev-peVALVvRDSIAISLMNVATKKGIKVPDTLQVIGFQNTryaqlsNPKLTCVEIPIY 290 Coprobacillus sp. ...
SEV87627  216 IDGFSk-YDEAPEIYKILKEkd--ldIVISmNDAIAIGIIHAAQEDGKNVPEDMEVLSCANTrlvhmsRPTLSSVRTPLY 292 Jeotgalicoccus sp....
CDC69199  226 NVSGK--TYLNEKAYEEILKdey-pdVAIVvRDSMAVSFINVARQLHISIPDQLQVIGFQNTkyaelsRPTLTCINTPIY 302 Staphylococcus sp....
SDB85783  239 FTTGRd-YQKTLELAPKVVAsg--atAMIVyDDVVAVALLNYLHDHHFDLPGQMELVTSNDTnysiisRPQLTSIAQPKY 315 Leuconostocaceae b...
Feature 1     #      #   #                                    ## #      
1ZVV_G    296 DIGAVAMRLLTKYMnke-----------------------tvdSSIVELPHRIEFRQS 330 Bacillus subtilis
KEO84480  296 DLGAVSMRLLTKLLnde-----------------------aieEYTVRLPHSILERTS 330 Tumebacillus sp. NFB
OAM70280  296 DIGAVAMRALTKLMene------------------------tlDTDLKLPYQIIKGGT 329 Aerococcus urinae
CRH93681  243 DIGAISMRMLTKIMhke-----------------------eleNREVVLNHGIKVRQS 277 Chlamydia trachomatis
AMC09168  293 DIGAVAMRLLTKLMkee-----------------------evtETQITLPHSFVWRST 327 Turicibacter sp. H121
Q48544    295 DLGAVAMRMLTKLMnde-----------------------sleDKHIILPYELIKKQS 329 Lactobacillus delbrueckii subsp. lactis
CCY07476  291 EMGNTAMSYLTNLMkeetn--------------------rpkkAEKILLAYDIIWRES 328 Coprobacillus sp. CAG:698
SEV87627  293 DIGAVGMRLLTKYMkge-----------------------avsHPDVILPHYIDYRGS 327 Jeotgalicoccus sp. A76(2010)
CDC69199  303 EIGEVAMDLLTDLMheaeleeeyyndfkhnddknedlleeekiEINKNVDYSIVWRQS 360 Staphylococcus sp. CAG:324
SDB85783  316 DIGAVAMRMLTKLMnne-----------------------dlkEQAVKLPHTIVQRQT 350 Leuconostocaceae bacterium R-53105

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