4M88,3LOP


Conserved Protein Domain Family
PBP1_ABC_ligand_binding-like

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cd06326: PBP1_ABC_ligand_binding-like 
Click on image for an interactive view with Cn3D
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions
This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Statistics
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PSSM-Id: 380549
Aligned: 96 rows
Threshold Bit Score: 250.152
Created: 14-Dec-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:3LOP; Ralstonia solanacearum substrate-binding periplasmic protein binds leucine, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                 ### 
4M88_A      5 IVLGQIGPFTGpl-aaDAAGLNQGIKAYLAQANkaggiRGQKLTLFEADDrfsgEGFAEQFPKAXEk-KPLALISPXGSA 82  Verminephrobacter ...
3LOP_A      6 ISVIQSLPLSGsq-avTGRALNAGARLYFDWLNlnggiNGETIRLVARDDeqkiEQTVRNVRDXARvdNPVALLTVVGTA 84  Ralstonia solanace...
OGA88985   36 VRIALVAPLSQapqspIGQQVAAGVKSYVEQVNstggiQGKPVQLLVYDDhfkpDETAALSAKAVRe-DGALALMTVGTA 114 Burkholderiales ba...
OYD47929   80 LVVGQSLPLSGeq-aaLGRQLRLGADLWFAHVNatggiQGTAIRHVVLDDafdpASVVRNTRQLVQqeQVSVLMGYPQAQ 158 Acidovorax sp. KND...
SFZ77767   26 VTVGHVGPVSSql-keLAESAEQTLDAYFAEFNkkagvNGIKVKMVYGDDafnpQKHAEETRRIIQqhNPIAMLGAGGSA 104 Chitinimonas taiwa...
SFZ76454   26 IPIVQVLDLSGpn-gdTGKDFLTGAQVYFDKLNsrgglRGRPLKLIVADDagkpANTVALSRKLVTehKPVAMFAYFGAE 104 Chitinimonas taiwa...
KRB89961   42 VRIGSVFGLTGpt-asTSAEGLAIANGYFDMINakggiNGNTLKLVMRDDqydpRKTPVLVDELVNkeGIVALVNGLGTA 120 Noviherbaspirillum...
OGQ52518   24 VKIGVVTGITGpi-ahTTAESLNITRGYLAMINaqggiNGNTLKLVARDDqydpAKTGVLVEEAITqdNVVVILSSAGTA 102 Deltaproteobacteri...
ARU32502   32 IRVGESIDLTGmn-gdLGKDFLAGARVYFDYINsnggiRGRKIKLEVRDNqgsvAQSRQITQDFLGkdRVDVLFGYYGEG 110 Sulfuriferula sp. AH1
APV50080   27 IVVGQVVDYSGpy-geASRDYVAGAKTYFDWVNsrggvFGIRVKHYVVDAsn-aAAMRDATRRLVDeqKADVLFGFVGDE 104 Betaproteobacteria...
Feature 1                          ###                                              #         
4M88_A     83 AikrxlddklldTAPVVVVNGVPGAeslrtpghpkFFHVRAGDKQEIEEIVSHAQxlgxsKLATLYQDLpTGTSGXAVVQ 162 Verminephrobacter ...
3LOP_A     85 NvealxregvlaEARLPLVGPATGAssxt--tdplVFPIKASYQQEIDKXITALVtigvtRIGVLYQEDaLGKEAITGVE 162 Ralstonia solanace...
OGA88985  115 TalkvieaqipeTTKTPLFPLRTGAasvreplnpfVFNIRAGYRAELQRLVRQLDlmgirRVALLYQNDaYGEFGRSVVR 194 Burkholderiales ba...
OYD47929  159 GvrpvlaqkllaASGVPLLGPATGVgwlrepvhpqVFPVRAGQTGEAEHLAGHLAtlgarRIAMVHAADeDGLGAVDALR 238 Acidovorax sp. KND...
SFZ77767  105 GplellkqnilsDAKIPLIAPISGApalr--snpwMFHLRAAWPDEMNKLAQQMAslghqRVGVFYQNDpDGKFGLFSAR 182 Chitinimonas taiwa...
SFZ76454  105 NvravladaslrREGLPMVAPLVGVelan---adpVFYLRASLADEMARIARFAAgsgfkRIALVVGDDaQGSAAAQAIA 181 Chitinimonas taiwa...
KRB89961  121 NtaalmktgilnQHKVPLVGVFSGSdiirgpgseqIFHTRASYTDEVMKIARLSTtlglkRVAVLYQDDgFGASINQSIA 200 Noviherbaspirillum...
OGQ52518  103 NtaailktgilaKSKVPMVGVFSGAeilrgpgteqIFHTRASYNDEVMKISRLVStlglkRVAVLYQDDgFGAGINESIA 182 Deltaproteobacteri...
ARU32502  111 VieataedrrfiQSDIPLVAPFSGVtlah---tgnIYFLRPSYIEETQAVLKYVQavgmsRLAVVYSPNaYGHAALQAVK 187 Sulfuriferula sp. AH1
APV50080  105 Svday----aaaGPAIALVGPLSGSeapag-vssrVFFVRPDYGTEVKQVISHFRalqlsRFAIVRAPTdDAARVARTVA 179 Betaproteobacteria...
Feature 1                                                   #                       #         
4M88_A    163 EAVKTVpggkIELNGVKSGpda--aaLAAAARQIAALgaqGVLVIGPppfIVAGIAALRKAdvtQPLFVLSyvsaaqivk 240 Verminephrobacter ...
3LOP_A    163 RTLKAHa---LAITAXASYprn-tanVGPAVDKLLAAdvqAIFLGATaepAAQFVRQYRARggeAQLLGLSsidpgilqk 238 Ralstonia solanace...
OGA88985  195 AEMQARn---SSPLGEAQYdrt-sadMTAPVDTLGRLnpdAIILIAGgtqAVSFIKAYRQRgfhGQIVGLSdvdpqflir 270 Burkholderiales ba...
OYD47929  239 AALTRKg---LTLAGAATLgl---egPDAAVTALRALrpeAIVLMAPtrhVAAFAKAYRGTgetAQLLSFAradhqevla 312 Acidovorax sp. KND...
SFZ77767  183 QEARKNn---LEVVATGAYekn-tvnVDAAVKAINEQnpsAILALGTddaVGSFLKAYRKAggmAQIYTVSvvgakelia 258 Chitinimonas taiwa...
SFZ76454  182 TGLRSNq---LVLSGTAVLnse-asnVEQAAATLLRTqpqAVLLAAPtiaSAAFVQAYQRQqpgTAFYAVAginpqtlre 257 Chitinimonas taiwa...
KRB89961  201 KAAQDYq---FEVIQKSGYkag-atdFSQQAKEIAGAkpqAIFLMGVpeaVFRFMKAYDAPkgaSQIYALSfvpakslad 276 Noviherbaspirillum...
OGQ52518  183 KAAQEFk---FEVILKAPYksg-dtdFSGQARKIIDAhpqAIFLMGVpdaVNRFMKAYDAPvgsSQIYTLSyvspktlad 258 Deltaproteobacteri...
ARU32502  188 SELKGKp---LQLVAEQAMrenstadMTLAIQKIRSSgaqATLMIMEtlpAAEFVKTYHPLspgALLLGLSlinhqtlme 264 Sulfuriferula sp. AH1
APV50080  180 QTLGGQg---LKGAGELVLgs----sPARDAAAVAAMrpqALVIVADtvpAAEFVKRYRPLdpgANIVALSmvnhrtmfe 252 Betaproteobacteria...
Feature 1                                                                                     
4M88_A    241 vvgVAGARGVGIVQAFPDPndkxlpVQREFQAAXKEAfpqxqeyTEFQLEGYLSARTVGEALKhpkntglsAANLAATLS 320 Verminephrobacter ...
3LOP_A    239 vagLDAVRGYSLALVXPNPgksvnpVIREFNRARAAVgakdvdlSFRAVEGFVAAKVLAEAIRragpkptrEQVRHALTE 318 Ralstonia solanace...
OGA88985  271 eagPDLARGVGVSQVFPSLgnriipVVRDFQRAHQRLglagepaSLAAFEGYLSAKVIVEGLKranvnrvsLGQALNSLG 350 Burkholderiales ba...
OYD47929  313 qvgSTVARGMGFTQVVPYPyggarpLVREYRALLATYgpmdaapSYAGFEAFIATKVLVEALRraggttwtPGRVATALE 392 Acidovorax sp. KND...
SFZ77767  259 tagLDAARGTGISQVMPYIfadssqLAKEYRAFVKRNkl---klGYIEFEYYIAARLFTEALGnmnknnlsGEALISALE 335 Chitinimonas taiwa...
SFZ76454  258 flgGEAARWVAVSALVPSPynpttpLAREFVATLKQYrde--ppSHSSLEGFAAAKLLVSALEqagdispgGLRAALEKL 335 Chitinimonas taiwa...
KRB89961  277 fagEQRVRGIGISQVVPNPgsttlpLAKDFQTFLKSPygkgvtsNPLNFEVYLNIRLVVDAIKmagakptpEKVTQALAS 356 Noviherbaspirillum...
OGQ52518  259 fagEARVRGIGISQVVPNPtstvlpLAKEFQAFLKTPypqgvksSPLTFEMYMNLRLVIEAIRmagprptgELVTQSLKT 338 Deltaproteobacteri...
ARU32502  265 vagKAAASGVVITQVVPHPanfsvaAVRELDKLMKKYrde--apSHLTMEGYLAAKLLVKTLEradtpkqiNQVLNGLHN 342 Sulfuriferula sp. AH1
APV50080  253 lvgPKLAHGVMITQVVPNPllpetpVQKEHLDAIRQFrde--ppSHLTLEGFLAAKALVEGVRragasptrESILAAFQK 330 Betaproteobacteria...
Feature 1                                    
4M88_A    321 txgeiDIGGFHLDFs--kGNAGSrYVNIGVI 349 Verminephrobacter eiseniae EF01-2
3LOP_A    319 lrdydVGGGFTVDFtd-rSRPGShYIELGVV 348 Ralstonia solanacearum GMI1000
OGA88985  351 h---fDLGGYVVNFsa-aQHEGSsYADLLVI 377 Burkholderiales bacterium GWA2_64_37
OYD47929  393 qlgtlDLGGFVVRYgr-gERQGGrYVDFTVL 422 Acidovorax sp. KNDSW-TSA6
SFZ77767  336 gignlNMGGFRLAFgp-nQRVGSkFVEVTVI 365 Chitinimonas taiwanensis DSM 18899
SFZ76454  336 r---tDLGGLPLRLdg-dNRRASrYGDMAVI 362 Chitinimonas taiwanensis DSM 18899
KRB89961  357 mn-gyQLGGYPISFse-sNRRGShYLDIGVI 385 Noviherbaspirillum sp. Root189
OGQ52518  339 mh-nyRLAGYPIDFte-tNRRGSnYLDIAVV 367 Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8
ARU32502  343 l----DLGGFYVNAg--pDHRFSsYVDITAI 367 Sulfuriferula sp. AH1
APV50080  331 vt-rmDLSGFVVDFtpkgRSEAT-HVDLAMI 359 Betaproteobacteria bacterium GR16-43

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