3LKB,4RU0


Conserved Protein Domain Family
PBP1_ABC_ligand_binding-like

?
cd06334: PBP1_ABC_ligand_binding-like 
Click on image for an interactive view with Cn3D
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Statistics
?
PSSM-Id: 380557
Aligned: 47 rows
Threshold Bit Score: 290.683
Created: 18-Jul-2007
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
ligand bindingdimer interface
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:4RU0; Pseudomonas fluorescens ABC transporter permease binds 3,6,9,12,15-pentaoxaheptadecane, contacts at 4.5A
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1           #                                                                      ###
3LKB_A      9 TLFWSGAITGPtsdAGAPYGAAVEDYCKWan-erKLVPGVVFNCVVRDDqynnANTQRFFEEAVDr---fKIPVFLSYAT 84  Thermus thermophil...
4RU0_A     35 FFPLATYRVGAyasSGVQVWAGXIDYLNYinqveGGINGVKLVWQECETewtaEKGIECYERFKNgldgaPVAVYQPNGA 114 Pseudomonas proteg...
SFU94662   38 YFGVPSSRVGPysaMGTGYYGGIIDYLNYvnmkqGGVNGVKLTYEECETeynaARTVECYQRLLNkg-tqKMVVFDTLGT 116 Polaromonas sp. YR568
SEO58507   31 KFALLQDFTAVytfLTDEYNQGQRDYLRLin-eeGGLDGRTFEALVRDTgnepQRGLEAYNRARRe----GAVLVDFLST 105 Aquisalimonas asia...
KFX72133   36 YFPVASSRVGPysaMGTGYYGAQIDYMNYvn-mtGGVNGVMLTWQECETeynaVKTVECYQRLMQkd-gqKIVVFDTLGT 113 alpha proteobacter...
OFX02104   14 VIGVQCDRTGAtqtVGVFFCPAVHDYTNLin-skGGVEGRKIRAMEIDHeykvPQGMEAYERHKKe----GAVSILLYGT 88  Alphaproteobacteri...
AFK55567   39 KFGMPQDFTAVytfVTSEYNQGQRDYLSLvn-grGGVGGVTFEALVLDHgnqpQRGIEAYERLKKa----GVLTVDALST 113 Tistrella mobilis ...
SFO38866   40 FHPMMVTRTGPfasAASGVSSGQQDYFALvn-mnGGIDGTKIRWEECDFgyktPRALECYERYRG-----DWKIVYPNST 113 Roseovarius sp. 112
ODU39541   37 QFATLLDFTRVytfLTDEYSQGQQDYIKLan-leGGIDGHPIKMIIKDHasypERGIAAYNEAKAa----GAVFFDFLST 111 Comamonas sp. SCN ...
OWU83132   27 KFGLCYDLSRSysfATPSFVQAAEDLATLvn-dkGGIEGHKVEFLVQDTanepQRGIECYESYKRe----GVLIFDTMST 101 Oceanicola sp. 22I...
Feature 1                          #                                                       #  
3LKB_A     85 GANLQLKPLIQeLRIPTIPASMHielid-ppnnDYIFLPTTSYSEQVVALLEYIArek------kgaKVALVVHPSpFGR 157 Thermus thermophil...
4RU0_A    115 PAAYALSERAEvDKIPLITLGYGrteatdgtvfPYNFPVXLTFYSEASTLVNYIAqreggfdrlkgkKIATLYHDSaYGR 194 Pseudomonas proteg...
SFU94662  117 PGAYAVIGRMQpDNVVLAQFGYGrtdaadgrvwPWVFGAHSNYWSQIAMKMNFIAgkeggvakmkdkTIVHLHIDTaYGR 196 Polaromonas sp. YR568
SEO58507  106 PVSRAAVNRVLnDEIVMITALHGrgdasdgttfPYIFPLMATYWSQATLLAEYIEkeegg---legkRIAHVYIDSpFGR 182 Aquisalimonas asia...
KFX72133  114 PGAYAVINRMAaDNVVLAQYGYGrtdaadgrvwPWVFNAASHYWSQIGVKLRWMAemeggipnmkgkKIVHLHIDSaYGR 193 alpha proteobacter...
OFX02104   89 PHTQALAAKLAeDKIPGTSPGFGsaasadgkryPYLFPIAATYWSQAAAAVKFVKdklgg--nlkgkKIAYLFYDNpAGK 166 Alphaproteobacteri...
AFK55567  114 PVSRALVPRAMaDHMNLLTTFSGrsdaadgttfPWVIPMSPMYWSQAAAVVSYMNqvseg--glkgkKLAYVYIDSpFGR 191 Tistrella mobilis ...
SFO38866  114 PAIFALAERLNtDEVLGINIAGGrsessdgetfPFLSPVMLNFWSQAASTIRYIAeleggeanlagkKIAFIHIDNaYGR 193 Roseovarius sp. 112
ODU39541  112 PVANALMPRCDeDHLPMIAFAHGradaadgeafPYVFPSAAIYRSQAALLLKYIDehegg---lkgkKIAFVHIDSpFGK 188 Comamonas sp. SCN ...
OWU83132  102 PVSQAVLPRAMrDGNVMMQPLVGrgdaivgdvfDWIFPVGPTYWGQAANAMDYIKqqsgg--sledtKVAFVFMDHpFGY 179 Oceanicola sp. 22I...
Feature 1                                                       #                          #  
3LKB_A    158 APVEDARKAArelgLQIVDVQEVgsgnldNTALLKRFEQAg-VEYVVHQNVag-pVANILKDAKRLgl-kMRHLGAHYtg 234 Thermus thermophil...
4RU0_A    195 ETLGPLKLLAekygFENIQIPVAdpg-neQSAQWRQIRQQn-PDWVFLRTWgv-sTPVAVKTAARFgfpvDHIIGDIWas 271 Pseudomonas proteg...
SFU94662  197 EPLPAMRVIAkewgFKLIEIAVPppg-leQQSQWLQIRREk-ADWVTFWGAgsgmNSTAITTAARVgfprEKMIYVTFgg 274 Polaromonas sp. YR568
SEO58507  183 EPVPVLEELAdrkgFELRTFAYPspg-neQSSTWSDVRRYq-PDHVLIWGAgg-gQAVSVREAIRNgidpSNILSVVWla 259 Aquisalimonas asia...
KFX72133  194 EPLPAMRKIAtdwgFTLIEIAIAppg-leQQSQWLQIRREk-PDWVTFWGAgsgmNSTAMTNAARInfprTKMMYVTFgg 271 alpha proteobacter...
OFX02104  167 EPLPILEDLAklegFELKTFAVPapg-veMGAQILDITQRyrADFVIAHLFgr-sPSVSIKEFKRVgfplSKVVSFVWgs 244 Alphaproteobacteri...
AFK55567  192 EPLPVLNALAeadgFELGTFPYPspg-seQSAVWTQVRRFr-PDWTIIWGGgi-gQTVALREAVRNgiprDRLATGVWls 268 Tistrella mobilis ...
SFO38866  194 QPFPIFDALAemygFEWKSWPLGwpa-leQSAAWVEIARRyhADWAIQWNYgq-sCNVPMTEMKKVgfplEKFIGTLWcg 271 Roseovarius sp. 112
ODU39541  189 EPIELLNRVAktkgFEVKLYPYPvpg-teQAATWSEVRKNr-PDKVIIWGAgp-gQAVSIRGAVTNgispKDIHSVLWls 265 Comamonas sp. SCN ...
OWU83132  180 EPQPVLEEITkrenADIRFFPFPlpg-vdQSSVWSQVRRYg-PDWVLFWGIsn-mHVVAAREMRRNgipmEKYIGVNWvs 256 Oceanicola sp. 22I...
Feature 1                                                                                     
3LKB_A    235 gpd--lialaGDAAEGFLWATSfymahedTPGIRLQKEIGRKygrpen---fiesvNYTNGMLAAAIAVEAIRRAqerfk 309 Thermus thermophil...
4RU0_A    272 sse--dvlpaGAAAKGYLALTPypagsdfEIHKRLKQYILDTgksdlkdlknfgsvYYNSGLVNAAVAVEAIRTAqgkfg 349 Pseudomonas proteg...
SFU94662  275 aee--dmvpaGDAAKGTFVVANavp-gkfPLIQDIEKVVYGAgkgnmqnpqrvgtvYYNRGVAAAVMWIEGMRNAqrihk 351 Polaromonas sp. YR568
SEO58507  260 etd--artvgADRAKGVKRFEAvatgtdyPIMERIREKVLDAglgtgde-envgttYYNIGVATMAMAVEAARLAleehg 336 Aquisalimonas asia...
KFX72133  272 aee--dmvpaGDSAKGTYVVANalpgtdfPLVKDIKDKVYGAgkgnlsdtsrvgtvYWNRGLGSAVMWVEAMRNAqkihn 349 alpha proteobacter...
OFX02104  245 aeadlqaaggGAVAEGYNTMQFagvgsdyPVHKQIRDMYQKEgkpapk--emastvYYNRGIFHIAVHIEAVRNAlkakg 322 Alphaproteobacteri...
AFK55567  269 esd--aeivgREQAKGVLKFEAvasgrepKIIADILAEVVAKgkgagpe-ekvgtaYYNMGVGMMAMVVEGVRLAlaadp 345 Tistrella mobilis ...
SFO38866  272 see--dilpaGDLAKGYISANYhgvgkefPVIQEIIEQVYGAekgniee-drvgtvAYNRGVLTGIIIVEAFRNAieeyg 348 Roseovarius sp. 112
ODU39541  266 esd--msafkGSEVVGVKRVTLvhtgtdhPILKRIVEKVVNAgngsgdk-krvgwsGYNIGVASMAIAVQAARQAvqkag 342 Comamonas sp. SCN ...
OWU83132  257 ktd---ienmGGLGKGLKRSSVvdsdlenPLRQEIVDKVYGAgkgagdv-agtensYYMVGLALYSIAFEAIRIAaeqtd 332 Oceanicola sp. 22I...
Feature 1                                                                    
3LKB_A    310 ritnetvyqai---vgmngpnafkpgfavSTKQGVEiDFTKSEHTGAEGLRILEAKGGRFVPV 369 Thermus thermophilus HB8
4RU0_A    350 krplngeegrw--glehlniddarlkdxgYLGLXQNlKLSCRDHEGGGAARVQQWDGANWTLI 410 Pseudomonas protegens Pf-5
SFU94662  352 kngqtvngaefrdgyealdmtpahlkelgIEGMIPPfKLSCANHEGAGKFRMMQWDGAKFQLV 414 Polaromonas sp. YR568
SEO58507  337 geltgek----------lrdgfrmledydAEGMMPPvTFTEDDHQGGGYGRVSEWNGEEWEPI 389 Aquisalimonas asiatica
KFX72133  350 kvgkavtgaefrdgyealnmtdarlaeigVKGMVAPfAISCANHEGAGKFALMQWDGKKFDKV 412 alpha proteobacterium qinghai
OFX02104  323 ananitge--------dvkngfekvkgitLDGLMPPlEITPADHEGGGWVQIFTVKGGKLTKS 377 Alphaproteobacteria bacterium RIFCS...
AFK55567  346 tlpltaer---------lnagltsirdfdAEGLLPPtTLTPEDHQGGGAGRMAAWDGTRWVAK 399 Tistrella mobilis KA081020-065
SFO38866  349 lpldgrkvrdg---frmiklddarlaelgATGLLPPlAFSPTYHGGIDPQLFQQWDGEKWETI 408 Roseovarius sp. 112
ODU39541  343 apltgek----------lkagfemlkdfnAEGLMPPiTITAKDHQGGGMGIISEWNGKQWTPK 395 Comamonas sp. SCN 67-35
OWU83132  333 gpltaea----------ikagyesirdfdNAGLTAAvTVTPEDHGGGGKTRIESWDGETWVQE 385 Oceanicola sp. 22II-s10i

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap