2FQW,2FQX,2FQY


Conserved Protein Domain Family
PBP1_PrnA-like

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cd06354: PBP1_PrnA-like 
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periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea
Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type 1 periplasmic sugar-binding protein-like fold.
Statistics
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PSSM-Id: 380577
Aligned: 90 rows
Threshold Bit Score: 141.935
Created: 11-Jul-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ##        #                                                               
2FQW_A      6 VVGMVTDSgdidDKSFNQQVWEGISRFAqenNAKCKYVTAst-----------dAEYVPSLSAFADeNMGLVVACgsflv 74  Treponema pallidum
CAA65879   16 KVSLIIDGtf-dDKSFNESALNGVKKVKeefKIELVLKESs------------sNSYLSDLEGLKDaGSDLIWLIgyrfs 82  Lyme disease spiro...
AAM89913   31 VVGVLAHGsf-yDKGYNQSVHDGVVKLRdnfGIKLITKSLrpypiegkrlltvdEAMTEDAYEVQKnPLNLFWLIgyrfs 109 Lyme disease spiro...
EPD32178   47 KACMVSVEgg-fSTPVGKQAEAGLSKSQedlGIETNEVEA--------------DDIPRALQQMVSsGCKLIFGVgedmt 111 Propionimicrobium ...
KIF43718   28 TACQVTDTggidDNSFNQTAWKGIQDAEaglGIDARFLESqa-----------eTDYMPNINSLLG-ECDLIITVgfllg 95  Lyngbya confervoid...
AKL72637   36 SVCHESDGpqvrDRSFNQNADAGLIRAErklNITAIRRNAen-----------tEDYRSIVQGFLArQCNLIITNgmrte 104 Actinobacteria bac...
KPK93552   20 EACMVAEVetieDNIYLSLMWDGVQAAEehlDVVGRYVVIqq-----------dSDLVRIINELNDgDCDLILLAgfysn 88  Anaerolineae bacte...
OGN74458   36 NVCMVTDSggigDKSFNDLTWSGVERGIadfGVSGNYLQStq-----------pTDFAPNLTACKDsGAQLIVCVgfmma 104 Chloroflexi bacter...
OGT26895   32 KACQVTDTggidDKSFNATAYKGVTDAVaqlGIEGKYLESqq-----------qTDYEKNINAFVDeGCNIIITVgfllg 100 Gammaproteobacteri...
OJV56840   45 KGCIVSDSggfnDKSFNESGFQGLKDAAgklGIQTASAESkt-----------dDAYTPNIQNMLSqNCNIIVTVgfkls 113 Cellulomonas sp. 7...
Feature 1                       #                                                         #   
2FQW_A     75 eAVIETSARfPKQKFLVIDAvvq--------drdNVVSAVFgQNEGSFLVGVAAALKakeagkSAVGFIVGMElgmMPLF 146 Treponema pallidum
CAA65879   83 dVAKVAALQnPDMKYAIIDPiysnd-----pipaNLVGMTFrAQEGAFLTGYIAARLsk---tGKIGFLGGIEgeiVDAF 154 Lyme disease spiro...
AAM89913  110 dLSVKLSYErPDIYYGIIDAfdygd----iqvpkNSLAIKFrNEEAAFLAGYIAAKMsr---kEKIGFLTGPMsehVKDF 182 Lyme disease spiro...
EPD32178  112 tPLEAAAKTnPDVNFALLGGtpnq-------qlgNLKPMVFnTHEVGFLAGYLAASQtk---sGTVGVFGGLFvpsVTMY 181 Propionimicrobium ...
KIF43718   96 dATKEAAEAnPGQKFSIVDFaydp-------aldNVVGQVFaTDQAAFLAGYLAAGMte---tGILGTFGGINippVTIF 165 Lyngbya confervoid...
AKL72637  105 pEVRIAAKQdPSQNFSVLDAtlhdgsdppnpsdsNVEEITFaTDQAAFLAGYLAAGVtk---tGIIGTYGGMQispVTVF 181 Actinobacteria bac...
KPK93552   89 dEISRTAAAnPDRLFTTVGYlhdl-------tydNVLGQVYkIDQVAFLAGYLAAGItk---tGILGTYGGANvdtVRDF 158 Anaerolineae bacte...
OGN74458  105 dDCKKAATEnPEIYYAGVDMggf--------elaNFRGVSAkMEESSYLAGYLAAGMst---tGKVGWYVGIMgpaVQIF 173 Chloroflexi bacter...
OGT26895  101 dATKAGAEAnPDVKFSIVDFaydp-------tvpNVLGQVFaTNDAAFLAGYVAAGVtq---tGKIGTFGGIPippVTDF 170 Gammaproteobacteri...
OJV56840  114 tATGDAAKAnTKTKFALVDAqptdaqg-kaltldNVKPLEFdTAQAAYLAGYLAAGMsk---tGKVGTYGGLKiptVTVF 189 Cellulomonas sp. 7...
Feature 1                                            #                            #           
2FQW_A    147 EAGFEAGvkavd---------------pdiqVVVEVANTFs--DPQKGQALAAKLYDSGV-NVIFQVAGgtGNGVIKEAR 208 Treponema pallidum
CAA65879  155 RYGYEAGakyan---------------kdikISTQYIGSFa--DLEAGRSVATRMYSDEI-DIIHHAAGlgGIGAIEVAK 216 Lyme disease spiro...
AAM89913  183 KFGFKAGifyan---------------pklrLVSKKAPSLf--DKEKGKAMALFMYKEDKvGVIFPIAGitGLGVYDAAK 245 Lyme disease spiro...
EPD32178  182 LDGFVQGvsyyngknsadvkvvgwdqqaksgSYITDGDPFn--NPDAAKTITSELIGKGA-DVIMPVAEvsNKGAIEPAK 258 Propionimicrobium ...
KIF43718  166 MNGFVRGadyyneqkgte---vtvlgwdpdaEQGLFTNNFe--SLDDGRAFAQNLYDEGA-DIVLPVAGpvGLGSAALAD 239 Lyngbya confervoid...
AKL72637  182 MDGLSAGikkynedhst-----svtllgwdgANGRFVGNFt--DRVAGQTITREFIDAGA-DIIMPLGGgaSLGTVAEFR 253 Actinobacteria bac...
KPK93552  159 MDGYALGaqyynrqhgtn---vevlgwdpitRSGLITGNFv--DREDGRRMGEQLLDAGA-DVILPAAGtqGFGTADVVL 232 Anaerolineae bacte...
OGN74458  174 GDGYYYGvqkynevhgtt---vavigydannPGNATATGSw-iDADKGRTVGQSQMDEGV-DIILPVNGgvGSATAAVMQ 248 Chloroflexi bacter...
OGT26895  171 MDGYALGaayynskhgts---vevlgwdpatQTGLFTGNFe--STDDGRAMGETLMDEGA-DIIMPVAGpvGLGTAAAVQ 244 Gammaproteobacteri...
OJV56840  190 MDGFADGiakynqvkgkn---vqligwdkakQDGLFDGGNspfDPGSGKANADSLVAAGA-DILLPVAGgaALDALTAAK 265 Cellulomonas sp. 7...
Feature 1                   #                     #                                     
2FQW_A    209 DRrlngqdVWVIGVDRDQYMDGvydgsksVVLTSMVKRADVAAERISKMAYdgsfpggQSIMFGLeDKAVGIPE 282 Treponema pallidum
CAA65879  217 ELgs---gHYIIGVDEDQAYLAp-----dNVITSTTKDVGRALNIFTSNHLktntfegGKLINYGlKEGVVGFV 282 Lyme disease spirochete
AAM89913  246 ELgp---kYYVIGLNQDQSYIAp-----qNVITSIIKDIGKVIYSISSEYInnrvfkgGIIIDRGlKEGVIEIV 311 Lyme disease spirochete
EPD32178  259 AAg-----AKLIWSGVDGCTENada--cdIIIASAIRDYSSAVSDVIYQTKege-fsnTAYIGTLkNAGAKLVG 324 Propionimicrobium lympho...
KIF43718  240 ELgt--deLKIIGVDADLYFTDpek--qhVYLTSIMKRMDSTVYQVIEAAMegs-fegGVIVGTLeNEGVGLSP 308 Lyngbya confervoides BDU...
AKL72637  254 EKqy--adRSIIWADVDGCTTLpgd--ckYFLTTVEKRLDNAVFEAIESAVndd-fkgTIRTETLkNNGVGLAP 322 Actinobacteria bacterium...
KPK93552  233 ERg----gAYIIGVDYDWALAEpay--adITLTSIIKKNDVFVFTAIQQVVegd-fsgGIYTGTLeNGDIGLAP 299 Anaerolineae bacterium S...
OGN74458  249 EKg----lGYIFGVDQDWTQTYpqy--saQILASLLKKVDVHIYDAIERLTtnt-wegGDFVLTLdNGGTALAY 315 Chloroflexi bacterium GW...
OGT26895  245 ERg----gGYIVGVDTDWTVTApdy--aaITLTSVLKNMDVTTFNAIQSVIdgt-fagGVTVGTLeNGGVGLAE 311 Gammaproteobacteria bact...
OJV56840  266 ATp----gTLVIWVDSDGALINpds--ssIILTSVMKLIGAAVGSAVTDAAgnk-fdaTPYVGTLkNNGVGIAP 332 Cellulomonas sp. 73-145

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