5UP2,5UOW,5EWM


Conserved Protein Domain Family
PBP1_iGluR_NMDA

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cd06367: PBP1_iGluR_NMDA 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-D-asparate (NMDA) subtype of glutamate receptors
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the ionotropic N-methyl-D-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type 1 superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type 2. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in the treatment of chronic pain.
Statistics
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PSSM-Id: 380590
Aligned: 4 rows
Threshold Bit Score: 415.099
Created: 18-Dec-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:
  • Structure:5UP2; triheteromeric interface of the Xenopus laevis NMDA receptor GluN1/GluN2A/GluN2B, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                      ####   #  #                     
5UP2_A      25 KIVNIGAVL-STKKHEQIFREAVNQAnkrhftrkIQLNATSVTh---RPNAIQMALSVCEDLISs-QVYAILVSHPpapt 99   African clawed frog
AAS87020    35 GSVRLGALM-PRAPLARARARAALARaalaprlpHNLSLELVVaappARDPASLTRGLCQALVPpgVAALLAFPEArpe- 112  human
5UOW_D      28 PNMDIAVILvGTTEEVAIKDVHEKDDfhh---lpVTPRVELVTm--qESDPKSIITRICDLMSDk-KVQGVVFGDDtdqe 101  African clawed frog
5EWM_B       3 PSIGIAVILvGTSDEVAIKDAHEKDDfhh---lsVVPRVELVAm--nETDPKSIITRICDLMSDr-KIQGVVFADDtdqe 76   human
Feature 1                   #                                                                  
5UP2_A     100 dhltptpISYTAGFYRIPVIGLTTrmsiy--sdksiHLSFLRTVPpYSHQALVWFEMMRlFNWNHVILIVSDDheGRAAQ 177  African clawed frog
AAS87020   113 ----llqLHFLAAATETPVLSLLRrearaplgapnpFHLQLHWASpLETLLDVLAAVLQaHAWEDVGLALCRTqdPGGLV 188  human
5UOW_D     102 a--iaqiLDFISVQTLTPILGIHGgssmim-adkeeASMFFQFGPsIEQQASVMLNIMEeYDWYIFSIVTTYFpgYQDFE 178  African clawed frog
5EWM_B      77 a--iaqiLDFISAQTLTPILGIHGgssmim-adkdeSSMFFQFGPsIEQQASVMLNIMEeYDWYIFSIVTTYFpgYQDFV 153  human
Feature 1                                                                                      
5UP2_A     178 KKLETLLeek--esKADKVLQFEPGt-----KNLTALLLEAKELea------rVIILSAseddATAVYKSAAMLdmtgag 244  African clawed frog
AAS87020   189 TLWTSRA-------GRPPQLVLDLSrrdtgdAGLRARLAPMAAPvggeapvpaAVLLGCdiarARRVLEAVPPG------ 255  human
5UOW_D     179 NKVRSTIensfvgwELEEVIHLDMSldd-idSKIQNQLKKLQSP---------VILLYCtkeeATYIFEVAHSVgltgyg 248  African clawed frog
5EWM_B     154 NKIRSTIensfvgwELEEVLLLDMSldd-gdSKIQNQLKKLQSP---------IILLYCtkeeATYIFEVANSVgltgyg 223  human
Feature 1                                                                                      
5UP2_A     245 YVWLVGERei--sgSALRYAPDGIIGLQLing-knESAHISDAVAVVAQAIHElfe---meqITDPPRGCVGntniwk-- 316  African clawed frog
AAS87020   256 PHWLLGTPlpp-kaLPTAGLPPGLLALGEvar-ppLEAAIHDIVQLVARALGSatqvqpkraLLPAPVNCGXlqpagpes 333  human
5UOW_D     249 FTWIVPSLvagdtdTVPDEFPTGLISVSYdewdydLPARVRDGIAIITTAASTmlse--hnsIPQSKSSCNNiqesrv-y 325  African clawed frog
5EWM_B     224 YTWIVPSLvagdtdTVPAEFPTGLISVSYdewdygLPARVRDGIAIITTAASDmlse--hsfIPEPKSSCYNthekri-y 300  human
Feature 1            #                                                                
5UP2_A     317 tgplfKRVLMSSKypdgvTGRIEFNe---dGDRKFAQYSIMNLqn-----rkLVQVGIFdg---sYIIQND 376  African clawed frog
AAS87020   334 pgrflARFLANTSf---qGRTGPVWvtgssQVHMSRHLKVWSLrrdprgapaWATVGSWrdgqldLEPGGA 401  human
5UOW_D     326 eahmlKRYLINVTf---eGRDLSFSe---dGYQMHPKLVIILLnqe----rkWERVGKYkd---rSLKMWP 383  African clawed frog
5EWM_B     301 qsnmlNRYLINVTf---eGRDLSFSe---dGYQMHPKLVIILLnke----rkWERVGKWkd---kSLQMKY 358  human

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