5UOW,5UOW,5EWM,4PE5,5UP2


Conserved Protein Domain Family
PBP1_iGluR_NMDA_NR2

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cd06378: PBP1_iGluR_NMDA_NR2 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-D-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in the treatment of chronic pain.
Statistics
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PSSM-Id: 380601
Aligned: 17 rows
Threshold Bit Score: 457.911
Created: 13-Jul-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimertrimer
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:5EWM; hetrodimeric interface of the Homo sapiens GluN1-GluN2B N-terminal domain, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                     ###### ##           
5UOW_D         28 PNMDIAVIL--VGTTEEVAIKDVHEKDDFhh--------------lpVTPRVELVTm--QESDPKSIITRICDLMSDKKV 89   African clawe...
5EWM_B          3 PSIGIAVIL--VGTSDEVAIKDAHEKDDFhh--------------lsVVPRVELVAm--NETDPKSIITRICDLMSDRKI 64   human
5UP2_B         26 PVLNIAVILgrTRYITERDIRSLWTRDMSl----------------dFDVNVVTLLv--QQTDPKSIITHVCDLMSGTKI 87   African clawe...
NP_001014714   99 EQLNIGLIA--PHTNFGKREYLRSINNAVtgltktrgakltflkdysFEQKNIHFDmmsLTPSPTAILSTLCKEFLRVNV 176  fruit fly
EFX89157        2 KRVSLGLLL--PHTTFRVREYSKAVQAAMnslrkqdl---sfinsyrFQVSDIHTDmlkVNPSPTAILDMVCETFLKRNV 76   common water ...
O15399         49 RPLNVALVFs-GPAYAAEAARLGPAVAAAvrs-------------pgLDVRPVALVl--NGSDPRSLVLQLCDLLSGLRV 112  human
Q12879         32 PALNIAVMLghSHDVTERELRTLWGPEQAag--------------lpLDVNVVALLm--NRTDPKSLITHVCDLMSGARI 95   human
OCT73184       38 RSLNVAIIF--SGISYPPESARFAPSAFRnf---------------sMEVNPISVIl--NDTNPRSLILQICDVLSSLRI 98   African clawe...
KYO31117       32 PVVNVAVVF--GGSSYPLHVRSRLTPQSFld--------------mpLEIHPITVIv--NNTNPSTLLTQICDILSSHKI 93   American alli...
CAG02237       23 ALCQRGGGV--QRRHLPGRDQRQVEPGELhgp-------------apGGEPHPPVLv--NNTNPRTLLTRICDTLSTNRV 85   Tetraodon nig...
Feature 1                                  ##                                                     
5UOW_D         90 QGVVFGDDtdqe--aiaQILDFISVQTLTPILGIHGGSSMIMADKEe--ASMFFQFGPSIEQQASVMLNIMEEYDWYIFS 165  African clawe...
5EWM_B         65 QGVVFADDtdqe--aiaQILDFISAQTLTPILGIHGGSSMIMADKDe--SSMFFQFGPSIEQQASVMLNIMEEYDWYIFS 140  human
5UP2_B         88 HGVVFGDDtdqe--aiaQILDFVSSQTFIPILGIHGGSSMIMADKDe--MSTFFQFGASIKQQATVMLNIMEEYDWHVFS 163  African clawe...
NP_001014714  177 SAILYMMNneqfghstaSAQYFLQLAGYLGIPVISWNADNSGLERRasqSTLQLQLAPSIEHQSAAMLSILERYKWHQFS 256  fruit fly
EFX89157       77 SAILFLSNtelygrniaAAQYFLQLTNYLRIPVIAWNADNSGLEKRsagNNLVIQLAPSASHQANAMLSLLKRYSWKQFS 156  common water ...
O15399        113 HGVVFEDDsrap--avaPILDFLSAQTSLPIVAVHGGAALVLTPKEk--GSTFLQLGSSTEQQLQVIFEVLEEYDWTSFV 188  human
Q12879         96 HGLVFGDDtdqe--avaQMLDFISSHTFVPILGIHGGASMIMADKDp--TSTFFQFGASIQQQATVMLKIMQDYDWHVFS 171  human
OCT73184       99 HGVVFEDDtrte--svaQILDFISAQTSMPIIGINGGSAIVLTPKEk--GSTFLQLGASTEQQLQVIFEVLEEYDWTSFA 174  African clawe...
KYO31117       94 HGIVFEDNigte--avaQILDFISSQTHVPIISISGGSAVVLTPKEp--GSAFLQLGVSIEQQIQVIFKVLEEYDWGSFA 169  American alli...
CAG02237       86 HGIVFEDNvgse--avaQILDFISTQTTVPIVGISGGSAVVLPHKGe--GSNFLQLGSSIEQQINGMFKVMEEYNWENFV 161  Tetraodon nig...
Feature 1             #   #                            # #                                        
5UOW_D        166 IVTTYFPGYQDFENKVRSTIENSFVGW--ELEEVIHLDMSldd-idSKIQNQLKKLQSPVILLYCTKEEATYIFEVAHSV 242  African clawe...
5EWM_B        141 IVTTYFPGYQDFVNKIRSTIENSFVGW--ELEEVLLLDMSldd-gdSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSV 217  human
5UP2_B        164 VITSNFPGYRDFISFIKTTVDNSFVGW--EVQNYITLDTSyt---dAQTLTQLKKIHSSVILLYCSKDEATYIFEEARSL 238  African clawe...
NP_001014714  257 VVTSQIAGHDDFVQAVRERVAEMQEHF--KFTILNSIVVTr-----TSDLMELVNSEARVMLLYATQTEAITILRAAEEM 329  fruit fly
EFX89157      157 IVTSTVAGYREFIQAVSEAAYKFESHNsyKFKILGTVLVNn----nASNLGSLLGTEARILLLYSTREEARSILKTAGQM 232  common water ...
O15399        189 AVTTRAPGHRAFLSYIEVLTDGSLVGW--EHRGALTLDPGag---eAVLSAQLRSVSAQIRLLFCAREEAEPVFRAAEEA 263  human
Q12879        172 LVTTIFPGYREFISFVKTTVDNSFVGW--DMQNVITLDTSfe---dAKTQVQLKKIHSSVILLYCSKDEAVLILSEARSL 246  human
OCT73184      175 VITTLFPGYEDFVDYIELLTDSSFIGW--ENRGILTLNLTddp-sgSKLKRQLKEITAQVRLLYCSREEADGVFKAAREA 251  African clawe...
KYO31117      170 VITSLYPGYNIFLDVIRSFTDASYFGW--ELQDVLTFEMTqdg-snSKTQRLLRQIDAQVMIVYCSREEAEYLFQVAEEA 246  American alli...
CAG02237      162 VITSLYPGYETYVDYIKSFIDTSYFKW--ELQDVLMFDMSadglndVRARRLLQQIDTQVLLVYCSHEEAQYLFAMAAES 239  Tetraodon nig...
Feature 1                                                                                       ##
5UOW_D        243 GLTGYGFTWIVPSLVAGdt-----------dTVPDEFPTGLISVSYDEWDYdLPARVRDGIAIITTAASTml----seHN 307  African clawe...
5EWM_B        218 GLTGYGYTWIVPSLVAGdt-----------dTVPAEFPTGLISVSYDEWDYgLPARVRDGIAIITTAASDml----seHS 282  human
5UP2_B        239 GLMGYGFVWIVPSLVTGnt-----------dIIPYEFPSGLVSVSYDDWDYgIEARVRDGLGIITTAASAml----ekHS 303  African clawe...
NP_001014714  330 KLTGENYVWVVSQSVIEk------------kDAHSQFPVGMLGVHFDTSSAaLMNEISNAIKIYSYGVEAyltdpanrDR 397  fruit fly
EFX89157      233 GLTGDKYVWIVTQSVIGst-----------tESPPEFPVGMLGVHFETTDNqLTKSISTALKVFVNGVEGfhr--esnAS 299  common water ...
O15399        264 GLTGSGYVWFMVGPQLAggggsgapgeppllPGGAPLPAGLFAVRSAGWRDdLARRVAAGVAVVARGAQAll----rdYG 339  human
Q12879        247 GLTGYDFFWIVPSLVSGnt-----------eLIPKEFPSGLISVSYDDWDYsLEARVRDGIGILTTAASSml----ekFS 311  human
OCT73184      252 GLTGPGYIWFMVGTNLGgt-----------dYMPEHLPVGLFTVLTAGWKDdLHRRVQNGVAIIAKGAEAly----kdFG 316  African clawe...
KYO31117      247 GLIGPGYVWIVPSLTVGnm-----------eLPPVSFPIGLISVVTESWKMsLRQKVRDGVAIIAMGASSyy----rtSG 311  American alli...
CAG02237      240 GLVGPGYIWIVPSLAVGnp----------diPPPDSFPVGLISIITDRWRMsLRKRVRDGVAIVVKGMQSfr----kqRG 305  Tetraodon nig...
Feature 1         #####   ###                #                                                    
5UOW_D        308 SIPQSKSSCNNiqesr------vyeaHMLKRYLINVTFEGRDLSFSeDGYQMHPKLVIILLnqe--------rkWERVGK 373  African clawe...
5EWM_B        283 FIPEPKSSCYNthekr------iyqsNMLNRYLINVTFEGRDLSFSeDGYQMHPKLVIILLnke--------rkWERVGK 348  human
5UP2_B        304 VIPEAKTSCYGqnern------dpplHTLHNFMINVTWDGKDLSFTeDGYQANPKLVVLLLnme--------reWEKVGK 369  African clawe...
NP_001014714  398 RLTTQSLSCEDegrgrwd--ngeiffKYLRNVSIEGDLNKPNIEFTaDGDLRSAELKIMNLrpsan---nknlvWEEIGV 472  fruit fly
EFX89157      300 TLLSPKVSCEDststssrwaqgeqlfKYLQNVRIDVDPGRPSLEFDaDGTRSSVELTIVNLqpsnsggsgrellWRQIGH 379  common water ...
O15399        340 FLPELGHDCRAqnrt--------hrgESLHRYFMNITWDNRDYSFNeDGFLVNPSLVVISLtrd--------rtWEVVGS 403  human
Q12879        312 YIPEAKASCYGqmerp------evpmHTLHPFMVNVTWDGKDLSFTeEGYQVHPRLVVIVLnkd--------reWEKVGK 377  human
OCT73184      317 FIPEFNNDCRApnlt--------ymnENLHRYFMNISWGAKDFSFNeDGYLINPALVVIALnke--------rsWEVVGI 380  African clawe...
KYO31117      312 HLPDVGKDCKTppst--------vtnSTFYSHMLNVTWEHRDFSFNeGGYLVRPTMVVISLnrh--------rlWEMVGK 375  American alli...
CAG02237      306 FIPEGHSDCHNpakt-------ppenDTLFRHMLNVTWENNDFSFNsDGYLVNPAMIIITLdre--------rqWDKVGT 370  Tetraodon nig...
Feature 1                      
5UOW_D        374 YKd---rSLKMWP 383  African clawed frog
5EWM_B        349 WKd---kSLQMKY 358  human
5UP2_B        370 WEa---kSLNMKY 379  African clawed frog
NP_001014714  473 WKswetqKLDIRD 485  fruit fly
EFX89157      380 WHswkkdGLDIQD 392  common water flea
O15399        404 WEq---qTLRLKY 413  human
Q12879        378 WEn---hTLSLRH 387  human
OCT73184      381 WEh---gELRMKY 390  African clawed frog
KYO31117      376 WEk---gIIHMKY 385  American alligator
CAG02237      371 YEt---gILQMRY 380  Tetraodon nigroviridis

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