5KC9


Conserved Protein Domain Family
PBP1_iGluR_delta-like

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cd06381: PBP1_iGluR_delta-like 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2
This CD represents the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type 1 superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type 2. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. GluRdelta2 was shown to function as an AMPA-like receptor by mutation analysis. Moreover, targeted disruption of GluRdelta2 gene caused motor coordination impairment, Purkinje cell maturation, and long-term depression of synaptic transmission. It has been suggested that GluRdelta2 is the receptor for cerebellin 1, a glycoprotein of the Clq, and the tumor necrosis factor family which is secreted from cerebellar granule cells. Furthermore, recent studies have shown that the orphan GluRdelta1 plays an essential role in high-frequency hearing and ionic homeostasis in the basal cochlea and that the locus encoding GluRdelta1 may be involved in congenial or acquired high-frequency hearing loss in humans.
Statistics
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PSSM-Id: 380604
Aligned: 3 rows
Threshold Bit Score: 856.597
Created: 17-May-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:5KC9; dimer interface of Mus musculus glutamate receptor ionotropic, delta-1, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                    ###   ##                          
5KC9_A       8 HIGAIFEeNAAKDDRVFQLAVSDLSLnddilqsEKITYSIKVIEanNPFQAVQEACDLMTqGILALVTSTGcasanalqs 87   house mouse
O43424      28 HIGAIFDeSAKKDDEVFRTAVGDLNQneeilqtEKITFSVTFVDgnNPFQAVQEACELMNqGILALVSSIGctsagslqs 107  human
Q9ULK0      25 HIGAIFEeNAAKDDRVFQLAVSDLSLnddilqsEKITYSIKVIEanNPFQAVQEACDLMTqGILALVTSTGcasanalqs 104  human
Feature 1         #                                                       #    #    ###  #  ## 
5KC9_A      88 ltDAMHIPHLFVQRnpggsprtachlnpspdgeayTLASRPPVRLNDVMLRLVTelrWQKFVMFYDSEYDIRGLQSFLDQ 167  house mouse
O43424     108 laDAMHIPHLFIQRstagtprsgcgltrsnrnddyTLSVRPPVYLHDVILRVVTeyaWQKFIIFYDSEYDIRGIQEFLDK 187  human
Q9ULK0     105 ltDAMHIPHLFVQRnpggsprtachlnpspdgeayTLASRPPVRLNDVMLRLVTelrWQKFVMFYDSEYDIRGLQSFLDQ 184  human
Feature 1       #    # ####                       #                                            
5KC9_A     168 ASRlgLDVSLQKVDKNisHVFTSLFTTMKTEELNRYRDTlRRAILLLSPqgAHSFINEAVETnlaskDSHWVFVNEEisd 247  house mouse
O43424     188 VSQqgMDVALQKVENNinKMITTLFDTMRIEELNRYRDTlRRAILVMNPatAKSFITEVVETnlvafDCHWIIINEEind 267  human
Q9ULK0     185 ASRlgLDVSLQKVDKNisHVFTSLFTTMKTEELNRYRDTlRRAILLLSPqgAHSFINEAVETnlaskDSHWVFVNEEisd 264  human
Feature 1                                                                                      
5KC9_A     248 peiLDLVHSALGRMTVVRQif-pSAKDNQKCMRNNHRISSLLCdpqegYLQMLQISNLYLYDSVLMLANAFHRkledrkw 326  house mouse
O43424     268 vdvQELVRRSIGRLTIIRQtfpvPQNISQRCFRGNHRISSTLCdpkdpFAQNMEISNLYIYDTVLLLANAFHKkledrkw 347  human
Q9ULK0     265 peiLDLVHSALGRMTVVRQif-pSAKDNQKCTRNNHRISSLLCdpqegYLQMLQISNLYLYDSVLMLANAFHRkledrkw 343  human
Feature 1                                                                                      
5KC9_A     327 hsmaslncirkstkpwnggrsmLDTIKKGHITGLTGVMEFREdSSNPYVQFEILGTtysetfgkdMRKLATWDsEKGLNG 406  house mouse
O43424     348 hsmaslscirknskpwqggrsmLETIKKGGVSGLTGELEFGEnGGNPNVHFEILGTnygeelgrgVRKLGCWNpVTGLNG 427  human
Q9ULK0     344 hsmaslncirkstkpwnggrsmLDTIKKGHITGLTGVMEFREdSSNPYVQFEILGTtysetfgkdMRKLATWDsEKGLNG 423  human
Feature 1        
5KC9_A     407 SL 408  house mouse
O43424     428 SL 429  human
Q9ULK0     424 SL 425  human

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