2FDR,4EEK


Conserved Protein Domain Family
HAD_BPGM_like

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cd07526: HAD_BPGM_like 
Click on image for an interactive view with Cn3D
subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH
This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Statistics
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PSSM-Id: 319828
Aligned: 14 rows
Threshold Bit Score: 157.095
Created: 25-Sep-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #####                                                                      
2FDR_A      5 DLIIFDCDGVLVDSEIIAAQVESRLLTEAGypisveexgerfagxtwk-------nillqveseasiplsasLLDKSEKL 77  Agrobacterium tume...
4EEK_A     29 DAVLFDLDGVLVESEGIIAQVWQSVLAERGlhldlteiamyftgqrfdgv--laylaqqhdfvpppdfldvlETRFNAAM 106 Deinococcus radiod...
NP_767436   4 DLIIFDCDGVLVDSEVISCRAHADVLTRHGypitseevlirflgvsekdar-rmveqeigrslpddlesqvnAATLQFYA 82  Bradyrhizobium jap...
NP_769430   7 ELIIFDSDGVLVDSEIIALTVLVRTASEEGvsismedairsfrgvkmtdcv-reierrlgrsvrdtfvadvrQATALAFD 85  Bradyrhizobium jap...
NP_249253   6 DALISDCDGVLVDSEVIAERVMYEALSAYApleelqrllegtfgltsrdi--ldrvekhfglripdsfnrevRQRSEEMV 83  Pseudomonas aerugi...
P31467      5 EAVFFDCDGTLVDSEVICSRAYVTMFQEFGitldpeevfkrfkgvklyeiidivslehgvtlakteaehvyrAEVARLFD 84  Escherichia coli K-12
NP_356203   7 PLLIFDCDGVLVDSEPVSIAVLLDMLSHLGvtmgeeeayerflgrsvasmt-ttlfeeygvetdidfldhmrATLFERFR 85  Agrobacterium fabr...
NP_769858   9 DLIIFDCDGVLVDSELLSCRCLSEVLAEFGlalseeqalelflgrstrai--eqhyrdlgqvvpdgflprlkSRVLETFS 86  Bradyrhizobium dia...
YP_353165   4 GLVIFDCDGVLVDSEVLAVAVLIAELDRAGarvdeafvhrhflgrsfpvvq-evvqrqfgvtlpetfqagerARLLAAFE 82  Rhodobacter sphaer...
NP_638068   4 ELLISDCDGVLVDSEILADRVMREALAAFVpaeplehllettfgqttrevl-rrveehfalqlpetllaqiqARSEALIA 82  Xanthomonas campes...
Feature 1                                     ##                                  #           
2FDR_A     78 LDXRLErdvkiiDGVKFALSRL---TTPRCICSNSssHRLDXXLTKvglkpyfAPHIYSAKDlgadrvKPKPDIFLHGAA 154 Agrobacterium tume...
4EEK_A    107 TGVTAI------EGAAETLRALraaGVPFAIGSNSerGRLHLKLRVagltelaGEHIYDPSWvgg-rgKPHPDLYTFAAQ 179 Deinococcus radiod...
NP_767436  83 SDLQPI------THVAAAIAAI---DLPKCVASSGtpEKIHHGLTCaglydllAPNIFSASQva--rgKPAPDLFLFAAA 151 Bradyrhizobium jap...
NP_769430  86 AELRPV------EGIHAALAAI---TAPVCVASNGpmSKLTHALGLtsllghfEGRIFSAYEvg--swKPDPGLFLHAAQ 154 Bradyrhizobium jap...
NP_249253  84 AQVQPI------PGAREALLAL---DLPVAVASNSrrHSLERSLARaglseliGERLASADMva--lpKPAPDVYLHAAS 152 Pseudomonas aerugi...
P31467     85 SELEAI------EGAGALLSAI---TAPMCVVSNGpnNKMQHSMGKlnmlhyfPDKLFSGYDiq--rwKPDPALMFHAAK 153 Escherichia coli K-12
NP_356203  86 TELKPI------DGIAETLDELl--PLKRCVASSSqpERIRYSLGLtglidkfEPHVFSATMvr--ngKPAPDLFLHAAR 155 Agrobacterium fabr...
NP_769858  87 ASLEPI------PGVGAVISGL---AAPFCVASSSdiDRVSLSLDVtglrahfGARLYTAQMvr--hgKPAPDLFLHAAA 155 Bradyrhizobium dia...
YP_353165  83 TGLRAM------PGAAETVRAL---AVPFCLATSStpARLTRSLEItglaalfEGRCFTASQva--rgKPAPDLFLLAAA 151 Rhodobacter sphaer...
NP_638068  83 AEVQPI------AGVRQALEQI---PLPLAVASNSrrHNVIASVERagltaraAGRIFSADMve--rpKPAPDVYLLAAR 151 Xanthomonas campes...
Feature 1                 ##  ##                
2FDR_A    155 QFGVsPDRVVVVEDSVHGIHGARAAGXRVIGFTG 188 Agrobacterium tumefaciens
4EEK_A    180 QLGIlPERCVVIEDSVTGGAAGLAAGATLWGLLV 213 Deinococcus radiodurans
NP_767436 152 QMKVaPERCLVIEDSLPGVTGAHAAGMTVLGFHG 185 Bradyrhizobium japonicum USDA 110
NP_769430 155 TLGAhPSRCVVVEDSLSGICAAKAAGMRVLGFTG 188 Bradyrhizobium japonicum USDA 110
NP_249253 153 LLGVaPERCLVVEDSSTGTRAALAAGMRVIGFVG 186 Pseudomonas aeruginosa PAO1
P31467    154 AMNVnVENCILVDDSVAGAQSGIDAGMEVFYFCA 187 Escherichia coli K-12
NP_356203 156 SMGVePRQCIVIEDSPAGIAAAKAAGMGVFAFTG 189 Agrobacterium fabrum str. C58
NP_769858 156 QMGAePARTLVIEDSVSGVQAGRAAGMTVWGFVG 189 Bradyrhizobium diazoefficiens USDA 110
YP_353165 152 EMGVaPARCLVIEDTEPGVRAGLAAGMQVWRFTG 185 Rhodobacter sphaeroides 2.4.1
NP_638068 152 TAGVaPERCLVIEDSPTGATAALAAGMQVLGFTG 185 Xanthomonas campestris pv. campestris str. ATCC 33913

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