3B59


Conserved Protein Domain Family
BphC5-RrK37_N_like

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cd08362: BphC5-RrK37_N_like 
Click on image for an interactive view with Cn3D
N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins
2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxygenases are activated by Fe(II).
Statistics
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PSSM-Id: 319950
Aligned: 21 rows
Threshold Bit Score: 145.47
Created: 18-Mar-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:putative oligomer interface [polypeptide binding site]
Evidence:
  • Structure:3B59_ A/B/C/D/E; oligomer interface of BphC5 from Novosphingobium aromaticivorans, defined by 4A distance.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #          #                                                         
3B59_A         6 VTEIRYVGYGVKDFDAEKAFYADvWGLEPVGEDaNNAWFKAQGadEHHVVQLRRADenRIDVIALAADSrsDVDALRASV 85  Novosphingobium...
BAD10901       8 LRRLRSVELRTHAAADSAEFYSEvWGLSVVESGrEGAWLRGTGd-QHHALQLTQADrnGLGRISFAVSTpaEVDDAARRV 86  Rhodococcus rho...
BAC00798      11 LRSLRSVALGVPDPVSARDFYHEvWGLSTVDEDyDRYWLRATGs-EHHVLRLGTSKtnRLERVAFAVATrrEIDEAAKRL 89  Rhodococcus sp....
WP_040385738  16 PRSLRSVALLVPDPKASIDFYTEsWGLSAVDRGdDVAWLRGTGe-EHHILQIGHHEqnALGRIVLALGTrrEVDDAARAL 94  Demetria terragena
CCG05370       9 ITHLRYVGIAAPDFERATEFYRTaWGLEQVAEDgGIAFFGSPAapENYLLRVRKDSakRMDVVAFGVRQasDVDALAERL 88  Blastococcus sa...
KHL15235       9 LRALRHVGLRTSAFDESVAFYAGpWGLEIVERTdDAVYLRAAGp-EHHVLALYRSAsnALDHVAFAVPTpaEVDAAAAWV 87  Nocardioidaceae...
EFV76305       7 ITHLRHISLITPVLEEQAEFYEKiWGLDKVSEDgDSVYFRGAGs-ENHILNLKRGEkaGLHHIAFGMVDknAVDRAAEIL 85  Bacillus sp. 2_...
WP_056125368   6 AGQLRSIAIGVTDLDAAERFYNDtWRLETVAKTeDAVYLRGAGp-FHHILALHRSVrpDVRHVTFSVATraDLDAIAART 84  Massilia
WP_055639212   2 VTHVRHVGLGVPDLGKAQEFYEKrWQLELVRTEdDRLYLGAGCp-ESHVLRLRSAAepRVDLISLAASSprEVDEVAERV 80  Streptomyces gr...
WP_055473990   2 ITHVRSVALGVPDIGAAREFFEKhWQLDLVATDsDRVFLGAGCq-ESHVLRLRATAepRVDLLCLAAATvaDVDEIAERV 80  Streptomyces pa...
Feature 1                                                  
3B59_A        86 EAAGCKVASEPavl-atPGGGYGFRFFSPDGLLFEVSSDVAK 126 Novosphingobium aromaticivorans DSM 12444
BAD10901      87 AERGILVVQGPgpv-ddAGGGYGLRIVDPEGRIIELIADTLA 127 Rhodococcus rhodochrous
BAC00798      90 DALGVPMLRSPgpi-ddAGGGYGLSLVDPEGRCIELSTDTFA 130 Rhodococcus sp. YK2
WP_040385738  95 ESLGVPIVHEPgpl-ddAAGGYGVQFVDPEGRLIELSVERFA 135 Demetria terragena
CCG05370      89 GQAGVRIDREPgkl-dtPGGGHGFRFWDLDGRLIEISSDVAE 129 Blastococcus saxobsidens DD2
KHL15235      88 EAEGTTILEKPgpl-drPGAGYGFRCLDPENRVLEISAENHA 128 Nocardioidaceae bacterium MUSC201
EFV76305      86 ASKGIPVISPPgyl-deEGKGYGLRFADPENRCIELSAWVEM 126 Bacillus sp. 2_A_57_CT2
WP_056125368  85 PAAGGRLLSEPaav-dePGGGTAVTIADPQGRILRFVHGDER 125 Massilia
WP_055639212  81 ARHPQGRLLREpgerqdLGGGYAVWFLDCDGRTVEVSAEVTG 122 Streptomyces griseoruber
WP_055473990  81 AAHPLGRLVSPpatcgdVGGGYRFRFLDCEGRTVEVSSRVAV 122 Streptomyces pathocidini

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