Conserved Protein Domain Family
7tmC_GABA-B-like

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cd15047: 7tmC_GABA-B-like 
gamma-aminobutyric acid type B receptor and related proteins, member of the class C family of seven-transmembrane G protein-coupled receptors
The type B receptor for gamma-aminobutyric acid, GABA-B, is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism. Also included in this group are orphan receptors, GPR156 and GPR158, which are closely related to the GABA-B receptor family.
Statistics
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PSSM-Id: 320175
Aligned: 95 rows
Threshold Bit Score: 141.544
Created: 10-Dec-2013
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative allosteric modulator binding site [chemical binding site]
Evidence:
  • Comment:based on the binding of human mGluR1 receptor to a negative allosteric modulator FITM (contacts at 4A)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                               #                      
Q6PRD1     379 VLRAAVLACQACCMLAIFLSMLVSYRCRRnkrIWASGVVLLETVLFGFLLLYFPVFILYfk-------------psVFRC 445  human
Q55AP3     392 SIKISILSVSIFCIFICVLGMIFITVLRNariLKSSSPSFLLLILFGCIVIFTGCILFSqp-------------atDKTC 458  Dictyostelium di...
EFA77750   411 GVQLVFTALGVGFAIACGVLIIAVIVLRNerpIRSASPLFCVIILVGGILVFVGCVIWVsy-------------ptTIVC 477  Polysphondylium ...
EGG24814   372 SITLGLSIPSGVFILFAIVSIVVIILFRNakvIKSASPLFSVLILIGCILIFAGIIIWSqn-------------ptTSLC 438  Dictyostelium fa...
EFW43112   662 SAFIAVQVVTSLCAVGTIVIFVILRRHLShssIRASSPVLLQFMLASTVLVYAAIFLMGvdsgsddnslvslstvaSNIC 741  Capsaspora owcza...
Q54ET0     434 TLNIVLGVITGVCVLIVIGIGSVIALQWRk--FRYSSPLFCMFIIIGALMGLASVFTLLpt-------------ptTPLC 498  Dictyostelium di...
EFW44129  1119 ALRYVILAIAVLGALSCVLLLLFIVANREapqMKASSPRFMCIIIGGCIIAFILVATLVpn-------------vtDTTC 1185 Capsaspora owcza...
EFW43443  1260 SLRFGFMSVAIIGEACAILLVIFVIRKREepiVKAASPKFCLIVIFGCMLEFALIPTLVpd-------------ltPALC 1326 Capsaspora owcza...
Q55AP1     383 SMKLGLTIVSGFCILFCIISMVLVIMFRHakiIKSASPIFCLLILFGCIIIFSGCIIFSls-------------ptDGIC 449  Dictyostelium di...
EFA81733   375 SITYGFSIAAGVVGLVAVIILVGLLVFREtkiMRSASPLFCMLIVFGGILIYVAVILWVqs-------------ptTGLC 441  Polysphondylium ...
Feature 1        ##  ##  #                                                                     
Q6PRD1     446 IALRWVRLLGFAIVYGTIILKLYRVlqlflsrtaq-rsallssgrLLRRLGLLLLPVLGFLAVWTVGALergiqhaplvi 524  human
Q55AP3     459 QGRVWLLSIGYTIFLGSLLIKNWRVwllfdnkkl--rkrsitnwkLYPWVAGILVVDVLILALWQGLGDiksesriigts 536  Dictyostelium di...
EFA77750   478 HLRYWIPSIGYGLIVGNLVVKNFRIyilfkamk----npritnlkLLPFSIGITSVHVLLLIIWSTVGNtksimdtnddn 553  Polysphondylium ...
EGG24814   439 RSRIWLISLGYTLMIGNLLIKNFRIwllfdnpkl--krrnipnkkLIPWFLGILILDAIILAVWIAVGDikaverlnidg 516  Dictyostelium fa...
EFW43112   742 RAIPWLLGLGFDLVYGAMLAKAWRIhkifnnrlr--rrimltdgnLIKHIVIFAMHDIILNAVWVGVDPlgleyhvlsss 819  Capsaspora owcza...
Q54ET0     499 SGFPWLLGLGYVIVFGTLFTKTWRTwrlfsnarkf-kiiritnkfIITLVGGFVLLESIFMIIWTAVDRpiplaepif-- 575  Dictyostelium di...
EFW44129  1186 TVHIWFGHIAFTVTFGALFFKSYRIavifnnrklkrqlsrtsdrfLLTMVSLIVGGMVTYLIIWTAVDRpvrdfhiv--- 1262 Capsaspora owcza...
EFW43443  1327 VTHIWIGHLGFAVAFGALFAKTHRIaaifnnknlarklrgtsdsfLMSRIAIVVSAVSLYLLVWSVVDKpdvvgttevg- 1405 Capsaspora owcza...
Q55AP1     450 GARVWLLSIGYTIFLGSLLVKNWRIwllfdnpkl--kkrsitnwkLYPFVAGILAADVLILALWQGLGDirsesrigids 527  Dictyostelium di...
EFA81733   442 RSRIWLMSLGYTIMLGNMVIKNFRIwlifdnpll--kklritnakLMPWLGGIILLNCLILAIMTGVGEvhsqrnygfeg 519  Polysphondylium ...
Feature 1                    #    #  ##  #                                  #  ##  #   #       
Q6PRD1     525 -rghtpsgrhfyLCHHDRWDYIMVVAELLLLCWGSFLCYATRAVls-aFHEPRYMGIALHNELLLSAAFHTARFvlvp-- 600  human
Q55AP3     537 --fyqytnvctnNDQGSIALYILLAFHGLKLLGTCFISFKIKLVdieeFNESKPITTSVFIILFCIFTIILLIApsssss 614  Dictyostelium di...
EFA77750   554 igkyefvrkchlTTAGDIIFYAILVIHGLILLVGCFVSFQIRAVdieeFNESKSIAAFLYAVMFALFIIIPLFVss---- 629  Polysphondylium ...
EGG24814   517 lgtyesmnacssSHAGDVVLYILLIFHGIMLLVGCFISFKIRSVdikeFNECGPVSTCLYAIAFCLFIVIPLMVsp---- 592  Dictyostelium fa...
EFW43112   820 -ssgttvtsqcrSDNFGIYLAIYLAFKGAVLLAGIYLAIACRNVad-qFNESKQLGFAIYNLTFISCIIIPLVLaiq--- 894  Capsaspora owcza...
Q54ET0     576 ---kageaqlqcTSDSEAWWYVFVFYKVFYILFGVFLAFKTRNVvd-sLNESKPITLALYNLTFVMVVAIALGFilr--- 648  Dictyostelium di...
EFW44129  1263 ----gsevrvlcSSSSTLWVVAVYIAEALLLAFGAIVAFKSRRAps-rWNESKFLAFAIWNIFVVVVIVMPLNYlvd--- 1334 Capsaspora owcza...
EFW43443  1406 ---etisvyymcKSSNDSWSVGLYALEAVGLLYGCWLAWQVRNAps-rFRESKFIVMAVWNILVVSIIILPLNYaln--- 1478 Capsaspora owcza...
Q55AP1     528 ltkyqyanvcssNDQGSVALYILLVFHGIKLLAACFISFKIKAVdieeFNESKPIASSIYIITFCLFIVIPLMVsp---- 603  Dictyostelium di...
EFA81733   520 lfeydyrvtcdmNKSGNIVLYILLIYHAILLLVGCFVSWKIRIVdiaeFNESKSIANTLYAISFCLFIIIPLMVsq---- 595  Polysphondylium ...
Feature 1                ##  #  #   #                  
Q6PRD1     601 ----slhPDWTLLLFFFHTHSTVTTTLALIFIPKFWKLGA 636  human
Q55AP3     615 sasspqpIASLETIICICSVTTTAISIGLLFGDKIYFITT 654  Dictyostelium discoideum AX4
EFA77750   630 -----tsTFNHIIILCVAFLFTAGSGLAIIFIPKFLMIKR 664  Polysphondylium pallidum PN500
EGG24814   593 -----qsIANQTIIICACGIFTTFSSMAILFLPKFGEMYT 627  Dictyostelium fasciculatum
EFW43112   895 -----asATVVYLIAAFGTLLALVMTIAIIFVPKIVLVYS 929  Capsaspora owczarzaki ATCC 30864
Q54ET0     649 -----dnPIAIIVIQTIAILLGFTVTVSVLFLPKVWMILS 683  Dictyostelium discoideum
EFW44129  1335 ----tsnPDTQFLLTCIGVLLAAFGTLGLCIVPKVHSVVS 1370 Capsaspora owczarzaki ATCC 30864
EFW43443  1479 ----tdnPDTQFMFTALGILLATFGTLGLIFIPKMYGLVT 1514 Capsaspora owczarzaki ATCC 30864
Q55AP1     604 -----qsVASQVITIVVCAIVTTLISISLLFGSKFYMMAT 638  Dictyostelium discoideum AX4
EFA81733   596 -----ttYDSQIIIICASAIFTTASTLTILFLPKFWRLYT 630  Polysphondylium pallidum PN500

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