Conserved Protein Domain Family
7tmA_5-HT1F

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cd15334: 7tmA_5-HT1F 
serotonin receptor subtype 1F, member of the class A family of seven-transmembrane G protein-coupled receptors
The 5-HT1 receptors, one of 14 mammalian 5-HT receptors, is a member of the class A of GPCRs and is activated by the endogenous neurotransmitter and peripheral signal mediator serotonin (5-hydroxytryptamine, 5-HT). The 5-HT1 receptors mediate inhibitory neurotransmission by coupling to G proteins of the G(i/o) family, which lead to a decrease in adenylate cyclase activity, thereby decreasing intracellular cAMP levels and calcium influx. The 5-HT1 receptor subfamily includes 5 subtypes: 5-HT1A, 5-HT1B, 5-HT1D, 5-HT1E, and 5-HT1F. There is no 5-HT1C receptor subtype, as it has been reclassified as the 5-HT2C receptor. In the CNS, serotonin is involved in the regulation of appetite, mood, sleep, cognition, learning and memory, as well as implicated in neurologic disorders such as migraine, schizophrenia, and depression.
Statistics
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PSSM-Id: 320456
Aligned: 4 rows
Threshold Bit Score: 428.598
Created: 13-Nov-2008
Updated: 17-Oct-2022
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to Human 5-HT1B G protein-coupled receptor bound to the agonist antimigraine medications dihydroergotamine and ergotamine.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                   ##  #
P30939        24 ILVSLTLSGLALMTTTINSLVIAAIIVTRKLHHPANYLICSLAVTDFLVAVLVMPFSIVYIVrESWIMGQvvCDIWLSVD 103 human
CAG09227      31 ILLTVTLFIVAILTTFLNCLVITAIAVTRKLHHPANYLICSLAVTDLLVAVLVMPFSIMYIQkETWVMGQvmCTIWLSVD 110 spotted green p...
EMC90458      24 ILISITLSVLALMTTAINSLVMTAIIVTRKLHHPANYLICSLAVTDFLVAILVMPFSIVYIVkETWIMGQvvCDIWLSVD 103 domestic pigeon
XP_002931817  24 ILISLTLSILTLMTTAINSLVIAAIIVTRKLHHPANYLICSLAVTDFLVAVLVMPFSIMYIMkETWIMGQaiCDIWLSVD 103 western clawed ...
Feature 1        #  ##                                                                 #         
P30939       104 ITCCTCSILHLSAIALDRYRAITDAVEYARKRTPKHAGIMITIVWIISVFISMPPLFWRHqgt--srDDECIIkHDHIVS 181 human
CAG09227     111 VTCCTCSILHLAAIAIDRYRAITDAVEYSRKRTGARAGQMVAVVWLLSILISLPPLLWRHftedseqEDQCIIiHHHIAF 190 spotted green p...
EMC90458     104 ITCCTCSILHLSAIALDRYRAITDAVEYARKRTPKHAGIMIAVVWIISIFISMPPLFWRHqtt--srDDECIIkHDHIVF 181 domestic pigeon
XP_002931817 104 ITCCTCSILHLSAIALDRYRAITDAVEYARKRTPKHAAFMIAVVWIISIFISMPPLFWRHqal--nkEDECIIkHDHIVF 181 western clawed ...
Feature 1           #   #                                                                        
P30939       182 TIYSTFGAFYIPLALILILYYKIYRAAktlyhkrqasriakeevngqvllesgekstksvstsyvl-------------- 247 human
CAG09227     191 TLYSTFGAFYIPLLLILILYYKIYRAAqtlymrreasrasrhscmtngsmipssypagdggprspeplspaekssdpste 270 spotted green p...
EMC90458     182 TIYSTFGAFYIPLALILILYYKIYKAAktfhrrsvsrivreevngqvlldtgerstksasmpsta--------------- 246 domestic pigeon
XP_002931817 182 TIYSTFGAFYIPLALILILYYKIYKAAktlyhkrsvsrvereqngqvlldatttlciaeksf------------------ 243 western clawed ...
Feature 1                                                                         #  ##     #    
P30939       248 -------ekslsdpstdfdkihstvrslrsefkhekswrrqkisgTRERKAATTLGLILGAFVICWLPFFVKELVVNVCD 320 human
CAG09227     271 epprervrapkksfqgksrrfesrrgesrsesrrsqfnqgprisgSRERKAAYTLGLIIGAFIICWLPFFVKEVIVNTCD 350 spotted green p...
EMC90458     247 --------ektsdplvdcdkinislrsprseskhekswkkqrissTRERKAATTLGLILGAFVICWLPFFVKEVVVNTCE 318 domestic pigeon
XP_002931817 244 -----------sdhstdfdkihitvrnarvemkqekayrkqkissTRERKAATTLGLILGAFVICWLPFFVKEVIVNICE 312 western clawed ...
Feature 1             #  ##  #   #                      
P30939       321 KCkiSEEMSNFLAWLGYLNSLINPLIYTIFNEDFKKAFQ 359 human
CAG09227     351 SCytSVEMADFLTWLGYINSLINPLIYTIFNEDFKKAFQ 389 spotted green pufferfish
EMC90458     319 RChiSEDMSNFLAWLGYINSLINPLIYTIFNEDFKKAFQ 357 domestic pigeon
XP_002931817 313 SCyiSDDMSNFLTWLGYLNSLINPLIYTIFNEDFKKAFQ 351 western clawed frog

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