Conserved Protein Domain Family
7tmB2_EMR

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cd15439: 7tmB2_EMR 
epidermal growth factor-like module-containing mucin-like hormone receptors, member of the class B2 family of seven-transmembrane G protein-coupled receptors
group II adhesion GPCRs, including the epidermal growth factor (EGF)-module-containing, mucin-like hormone receptor (EMR1-4) and the leukocyte cell-surface antigen CD97, are primarily expressed in cells of the immune system. All EGF-TM7 receptors, which belong to the B2 subfamily of adhesion GPCRs, are members of group II, except for ETL (EGF-TM7-latrophilin related protein), which is classified into group I. Members of the EGF-TM7 receptors are characterized by the presence of varying number of N-terminal EGF-like domains, which play critical roles in ligand recognition and cell adhesion, linked by a stalk region to a class B seven-transmembrane domain. In the case of EMR2, alternative splicing results in four isoforms possessing either two (EGF1,2), three (EGF1,2,5), four (EGF1,2,3,5) or five (EGF1,2,3,4,5) EGF-like domains. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. EMR2 shares strong sequence homology with CD97, differing by only six amino acids. CD97 is widely expressed on lymphocytes, monocytes, macrophages, dendritic cells, granulocytes and smooth muscle cells as well as in a variety of human tumors including colorectal, gastric, esophageal pancreatic, and thyroid carcinoma. However, unlike CD97, EMR2 is not found in those of CD97-positive tumor cells and is not expressed on lymphocytes but instead on monocytes, macrophages and granulocytes. CD97 has three known ligands: CD55, decay-accelerating factor for regulation of complement system; chondroitin sulfate, a glycosaminoglycan found in the extracellular matrix; and the integrin alpha5beta1, which play a role in angiogenesis. Although EMR2 does not effectively interact with CD55, the fourth EGF-like domain of this receptor binds to chondroitin sulfate to mediate cell attachment.
Statistics
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PSSM-Id: 320555
Aligned: 13 rows
Threshold Bit Score: 441.78
Created: 11-Nov-2013
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative polypeptide ligand binding pocket [polypeptide binding site]
Evidence:
  • Comment:based on mutagenesis of human glucagon receptor (GCGR), and modeling studies of GCGR and other related class B GPCRs
  • Comment:Residues in the globular N-terminal extracellular domain and the extracellular loops of the 7TM domain may also be involved in ligand binding.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #   #                                          #  ##  #      #      #    
Q14246        599 DFSLYIISHVGIIISLVCLVLAIATFLLCRSIr-nHNTYLHLHLCVCLLLAKTLFLAGIHKTdnkmgCAIIAGFLHYLFL 677  human
Q86SQ3        187 DPVLTVITQVGLTISLLCLFLAILTFLLCRPIq-nTSTSLHLELSLCLFLAHLLFLTGINRTepevlCSIIAGLLHFLYL 265  human
NP_038475     533 DPVLTVITYMGLSVSLLCLLLAALTFLLCKAIq-nTSTSLHLQLSLCLFLAHLLFLVAIDQTghkvlCSIIAGTLHYLYL 611  human
XP_002935467  479 DRGLLYISRIGLGVSVLCLFLSLVTFLLCRSLr-sAHTSMLIALCGCLFLGQLIILFGLPQTqfrilCSIIAGCLHYILL 557  western clawe...
XP_005314833  248 RLESLLGKRLSRNRGLLCLFLAILTFLLCRSIr-nVSTSLHLQLCLCLFLADLLFLTAVTRTgsrvvCAVIAGLLHYLFL 326  western paint...
XP_005236064  255 SYALLVVTYVGMSVSLVCLFLAIITFLLCRSLw-sISVTLHLHLSICLFAADLLFLVAVPHTtnqltCAITAGFLHYLFL 333  peregrine falcon
XP_006114317  725 DFPLFLISHVGLALSLLCLLLAILTFLLCRSIr-nVNTSIHLQLCLCLFVADLLFLTAVDRTrhqvgCAVIAGFLHYLFL 803  Chinese soft-...
XP_006013467  108 DIALEVITYVGIILSLVCLAACIVTLKCFNSVr-tTSTTIHLHLCVCLFLAELLFLIGMDRTsnktlCGIIAGFLHYLFL 186  coelacanth
XP_008107652  305 SRILYIITYIGLISSVICLFLSVVTFLICHSIq-nNNTFIHIQLSMCLFLADLLFLIGIQKTdkkilCSVIAGILHYLFL 383  green anole
XP_006002992  372 DLGLTVITYIGIIISLICLFFTIFTHCCFHSIr-nPSTTLQLNLCISLFVAELIFLVGIDYTnnkiaCAIIAGILHYSFL 450  coelacanth
XP_006869070  826 DPVLEVITDVGLILSLLCLFLAILTFLLCRSVq--NTNTLHLNLSLCLFLANLLFLVGIDRTkpkvlCSIIAGALHYLYL 903  Cape golden mole
XP_007063590  386 DFALFVISQTGLIISLICLILAIVTFLFCHPIrntSSTFLHLQLSMCLFLADLLFIVGIDKTynklmCSITAGLLHYLFL 465  green sea turtle
XP_007438343   90 DLILSIISYLGLSISVICLFLCIATFLFCRSSh-nSSTFIHLQLSLCLFFADLLFIAGIDKTdnkilCSVIAGMLKYLFL 168  Burmese python
Feature 1                                                                                 ## # #  
Q14246        678 ACFFWMLVEAVILFLMVRnlkvvnyfssrnIKMLHICAFGYGLPMLVVVISASVQpqgygmhnrCWLntETGFIWSFLGP 757  human
Q86SQ3        266 ACFTWMLLEGLHLFLTVRnlkvanytstgrFKKRFMYPVGYGIPAVIIAVSAIVGpqny-gtftCWLklDKGFIWSFMGP 344  human
NP_038475     612 ATLTWMLLEALYLFLTARnltvvnyssinrFMKKLMFPVGYGVPAVTVAISAASRphlygtpsrCWLqpEKGFIWGFLGP 691  human
XP_002935467  558 CAFCWMTLESVLLFLTVRnlnamnyltsrrSHFPTACIIGFGVPAVIVAISAAVRydgygtgksCWL--SLNLIWSFLGP 635  western clawe...
XP_005314833  327 ACFSWMFLEGLHLFLTVRnlkvvnytsasrFKKRFMYPFGYGFPALVVAISAAVNadgygtskhCWLslDKGFRWSFLGP 406  western paint...
XP_005236064  334 ACFAWMFLEGLHLFLTIRnltvlnytsasrFRKRYIYPAGYGTPAIVVAISAAVHpggygtehyCWLsmKGGFIWSFLGP 413  peregrine falcon
XP_006114317  804 ACFAWMFLEAVVLLLTVRnlgvinyfsthsPKMWFLSLFGYGFPTLVVAVSATLMpkgysrqenCWLnmERGFIWIFLGP 883  Chinese soft-...
XP_006013467  187 ACFAWMLLEGFQLYLMVRnlkvvnyfsthsIKRRFMYPIGYGLPAVIVVISAAVFhigygtknhCWLttEKGFVWSFLGP 266  coelacanth
XP_008107652  384 ACFVWMFLEGLNLYFIVRnlkvanyrgarkQMKISMYFCGYGLPAVIVAIAAATFpegygtrelCWLkfEKGFVWSFTGP 463  green anole
XP_006002992  451 ACFAWMCLAAVQLCLMVInlkavkffrshvIRRRYMYPVGYGAPAVIVAISAGVDhqgygtakhCWLsmERYFLWSFLGP 530  coelacanth
XP_006869070  904 ASFTWMFLEGLHLFLSVRnlkvakytssgrFNKKSMYLVGYGISAVIVAVSAGLNpsgygtpthCWTslQKGFIWSFIGP 983  Cape golden mole
XP_007063590  466 ACFAWMLLEAVSLYLIVRnlkvknysgtgrCTRKCMYPFGYGLPAVIVITSAASApnsygtpyhCWLnpDNGFRWNFLGP 545  green sea turtle
XP_007438343  169 ACFVWMFLEAVNLYLIVRnlkvanysgaskYMKISMYLCGYGLPVLIVAISAGINpgafgtqyyCWL--NPDFIWSFMGP 246  Burmese python
Feature 1                                                              #  #               #   #   
Q14246        758 VCTVIVINSLLLTWTLWILRQRLSsvnaevstlkDTRLLTFKAFAQLFILGCSWVLGIFQIGpv----aGVMAYLFTIIN 833  human
Q86SQ3        345 VAVIILINLVFYFQVLWILRSKLSslnkevstiqDTRVMTFKAISQLFILGCSWGLGFFMVEevgktigSIIAYSFTIIN 424  human
NP_038475     692 VCAIFSVNLVLFLVTLWILKNRLSslnsevstlrNTRMLAFKATAQLFILGCTWCLGILQVGpa----aRVMAYLFTIIN 767  human
XP_002935467  636 VCVFITINTTLLVLTFWILRAKLAslnanvsslkNTRLLAFKALVQLFILGSTWILGFFQCGpg----aIVASYLFTICN 711  western clawe...
XP_005314833  407 VCAIILINITFFALTLWILRNRLSslnadvstlrDHRLLTFKAIAQLFILGCTWSLGLLQVGpa----aTVMAYLFTIVN 482  western paint...
XP_005236064  414 VCVIILVNLLFFLTTLWILRDKLSslnadvtalkSTRLMTFKALAQICILGCTWGLGLLQAQgd----nIVVAFIFTIVN 489  peregrine falcon
XP_006114317  884 VCVIVGISSVIFAVTLWMLQRKLSslnsevstlkDTRLLTFKAIAQVFILGCTWIFGLFQTGpa----aVVMAYLFTILN 959  Chinese soft-...
XP_006013467  267 VCTIIGINSILFVVILWILRRNLStlntdvatlkNNRSITLKAIAQCVILGCTWIVGIFHVQke----tLVLAYLFTIFN 342  coelacanth
XP_008107652  464 VCAIIVINLVLLCLILINLHQKFAslnkevstfrNTRALILKALAHVFILGVSWCLGLFLYGpl----aTVMAYLFTITN 539  green anole
XP_006002992  531 VCLIILVNLTLFIVIIWILKEKLAsldkdvstvkESRSLTFKVMAQFLILGCTWMFGLFHVGqg----tLIMAYVFTILN 606  coelacanth
XP_006869070  984 VCVVVVINLIFYLTTLWILRDRLSslnkevskmkNTRMLTFKAIAQLFLLGCXWSLGFFLAEsvkesfrSVIAYAFTITN 1063 Cape golden mole
XP_007063590  546 VCAVVVINFVFFCLTLKLLREHLSslnaelstlrNTRSLTFKALAHLLVLGLTWGLGTFQFGpl----aTVMGYLFTITN 621  green sea turtle
XP_007438343  247 VCALIVVNLVLFCLILKNLHEKLAslnseissvrNTRSLIFKAIAHVFILGVTWCFGLFQYGll----dEFMAYLFTITS 322  Burmese python
Feature 1                                     
Q14246        834 SLQGAFIFLIHCLLNGQVREEYKRWITG 861  human
Q86SQ3        425 TLQGVLLFVVHCLLNRQVRLIILSVISL 452  human
NP_038475     768 SLQGVFIFLVYCLLSQQVREQYGKWSKG 795  human
XP_002935467  712 SLQGAFIFLVHCLLNHQVREEYRKVFHR 739  western clawed frog
XP_005314833  483 SLQGAFIFLVHCLLNRQVREEYRRWIKG 510  western painted turtle
XP_005236064  490 SLQGAFIFLVHCVLNRQVTEQYRRWFRV 517  peregrine falcon
XP_006114317  960 SLQGVFIFLVHCLLNRQVQEEYKRWFTC 987  Chinese soft-shelled turtle
XP_006013467  343 SLQGTAIFTIHCVLNRQVREEYRKYLKG 370  coelacanth
XP_008107652  540 SVQGVFIFLVHCLFNKKVRETYLRWICC 567  green anole
XP_006002992  607 SFQGLFIFLVYCVLNRQGTSTSASTPVQ 634  coelacanth
XP_006869070 1064 VLQGVYIYGVHCLLNRQVREEYKRWLTR 1091 Cape golden mole
XP_007063590  622 SMLGTFIFVVHCLLNRKVREEYWKLFTR 649  green sea turtle
XP_007438343  323 SVQGVFIFLVHCLLNQKVREAYWRWICC 350  Burmese python

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