3JQO,2BHV,3ZBI


Conserved Protein Domain Family
VirB10_like

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cd16426: VirB10_like 
Click on image for an interactive view with Cn3D
VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)
This family contains VirB10, a component of the type IV secretion system (T4SS) and its homologs, including TraB, TraF, IcmE, and similar proteins. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10 interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. In Gram-negative bacterial pathogen Helicobacter pylori, an important aetiological agent of gastroduodenal disease in humans, the comB3 gene encodes protein with best homologies to TraS/TraB from the Pseudomonas aeruginosa conjugative plasmid RP1 and TrbI of plasmid RP4 and VirB10 from the Ti plasmid of Agrobacterium tumefaciens, as well as DotG/IcmE of Legionella pneumophila.
Statistics
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PSSM-Id: 319754
Aligned: 519 rows
Threshold Bit Score: 44.0657
Created: 29-Mar-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 66 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:VirB8 interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble
  • Structure:3JQO: Escherichia coli outer membrane complex of a type IV secretion system VirB10; contacts at 4.0A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ##     ##   ## ####           # ##      ### #           # # # #     #    # # #
3JQO_A        43 TVPKg----KXIPCGTgTELDTt--------vPGQVSCr--VSQDVYSadglvrlidkGSWVDGQItGGIKdgqARVFVL 108 Escherichia col...
AEF05656     219 TLPKd---aTLTDGLAlTALIGripvegqtpdPYPVKIy--IGRENLLanghelpeveGMIFSGLGfGDWNl--SCVSAR 291 Alteromonas sp....
CCB87836     180 VIPAg----TIVRCVVvSGASVstgig-tpmgSRKILLk--PTSNGWLpagvr-valkDSLIMCSAtANLAe--ERVYVR 249 Simkania negeve...
ELD63312     207 QLPV-----GFMKAKLlVGVNAltgef-gsenPQTLMFr--VQAPAQLpnfik-mnlrGCFNISNVsGNLSs--ERIIVL 275 Escherichia col...
WP_011711594 248 WLSAg----TVIPTVLlTGQHVptsss-aqsnPAPVLLk--IVDVGVMpngft-idlvGCTVIGAArGSASt--RRVEIR 317 Shewanella
WP_013009897 177 YVPSn----SIFKAVLlTGVYAktstq-gksnPTPVIFr--LTDLSFFpnevr-rnlaGCYVGGEAhAELSd--ERVHTR 246 Denitrovibrio a...
CCN40227     273 RINAg----SLVPLTLlTGVDAptgk--raadKLTATFv--VTGEVRLpdgse-lnldPCRVLSDVqAHKTe--ARAYFR 341 Vibrio nigripul...
KGL16620     313 DIAL-----GLSRAIMlNGVDAsilgm-grqeDAPVMFs--IMSKMSIangey-tntkDCLVLGSAvGQMTv--QKAQIR 381 Helicobacter ma...
KIM08756     320 KLPKmtlmaGFQRATLvTGADVptlq---kgnDLTRTVwfsTTGDMLIanght-enikECIIQAAAtGNFAs--ASADIR 393 Sulfurovum sp. ...
WP_053085169 195 DLPV-----GFMKATLlVGINArsgef-gqsnPQQIVFn--VSAPAQLpnrik-lnlkGCFVVANAnGDLSa--KRIEAL 263 Vibrio crassost...
Feature 1          # # #      ######       #     ###         # #  #  # #  #                      
3JQO_A       109 WeRIRNDq----dGTIVNId-----sAGTNslGSAGIPGQVDAHXwERLRGAIXISLFSdtltalvnqtqs--------- 170 Escherichia col...
AEF05656     292 LmSATFIfe--dgSIVNHSsagqplgYISDpsGVPCVAGSFVTNApTFLSQRVGLAAIGaagsayaeaqqqrqtsaltgt 369 Alteromonas sp....
CCB87836     250 GdRMNLTyp--dgYTITTEiaa--yvSGED--GQEGVRCALIDKNwSSTFWAGLASGVGeigkamqsgnplldlpklgkt 323 Simkania negeve...
ELD63312     276 PvSIHCMtm--dgRYIVEGqvk-gfvSDRD--GKRDMSARVVSRAgRLLAGTVLAKSVEafanvignqsiqqnvsplgsi 350 Escherichia col...
WP_011711594 318 AeSISCIdq--rgRAIEQPfia--avQGQD--GHSGIPAKLVTLYgEVVKQSFWAGIYGtgaqtltqaatnrvsgdvvyd 391 Shewanella
WP_013009897 247 LtSFSCItsd-rrQVVDIPvtg--rvQGGD--GSVGIAGKVISKQeAALLLAGVSGFIEggaegfsaanstqnvnvfgts 321 Denitrovibrio a...
CCN40227     342 PyKLSCKfe---fGDLDMPlag--siSGPD--GALGIKGHLVNPAgKAVLYSTMTSGIDlaaawldseidtiela----- 409 Vibrio nigripul...
KGL16620     382 LdKISCIftnkegDKFIAEgqv--qgWASDenGQLGVQGVLITQEgKVLRASLPLAAVQtaldyitrsatnvvlpttgtp 459 Helicobacter ma...
KIM08756     394 LtKISCSavdengKYYKLVgnvkgwvYGEN--GKQGLKGRLVTKEgELIEKAIPLALLEgaikalenstkssstvyaypg 471 Sulfurovum sp. ...
WP_053085169 264 PvSMNCLtq--ngEYKITSsslkgfvQDAD--GKRGLDARVVSRArHLLASTLFAKTVTgfgkvisaqgftstntaigst 339 Vibrio crassost...
Feature 1                                   ##########     # # ###  #   #    ##### 
3JQO_A       171 --------------nniqynstensgGQLASEALRSYxsipPTLYDQQGd-AVSIFv--aRDLDFS 219 Escherichia coli K12
AEF05656     370 t----tstvsgdinklaageavqsatDEVSEWLLARQkqsfDAVVVNPGa-AVSVHl--dRSLPLD 428 Alteromonas sp. SN2
CCB87836     324 d---tsfiinldtlkqggiqggstalDKMTEHLLKEKeknaPFLILDSMr-HVDLIf--lHDCEIG 383 Simkania negevensis Z
ELD63312     351 -----ntikpdeavkngaatgvaggfTEVSKYLLNLAqqtsPALETGPGk-DVMLFi--qETAELT 408 Escherichia coli KTE233
WP_011711594 392 ------gtyfkntatsslaggsstafDKIADFYLQLAdearPYLEMHGGieGVDLIv--qRGVSLK 449 Shewanella
WP_013009897 322 e----qtytddqiarnaigkgvgksaGVLTDFFEDLLqeikPVIHAQGGq-EVELIi--sKGFSLE 380 Denitrovibrio acetiphilus
CCN40227     410 ----------ggdtlnsgggavasstAPLREYYLEEAkelqPYVQVRPLv-KASMVv--lDTVTLE 462 Vibrio nigripulchritudo FTn2
KGL16620     460 t----gyqnlnasfgtggsnaasqtlGRLIQIYEKYLqnlnPVINVRGGr-EVTLMf--kGGEKIA 518 Helicobacter magdeburgensis
KIM08756     472 ttgtstmnniqdsftegttktasttlDKFSDYYLMILeqlnPTIELKAGr-ETTIGfeggEVFQLE 536 Sulfurovum sp. FS06-10
WP_053085169 340 -----ttpndgevartafaggvaegfDDLGDYLLDLAkqiqPTLEHGAGk-NVLIWv--aEASTLK 397 Vibrio crassostreae

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