Conserved Protein Domain Family
RING-H2_UBR3

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cd16483: RING-H2_UBR3 
RING finger, H2 subclass, found in ubiquitin-protein ligase E3-alpha-3 (UBR3) and similar proteins
UBR3, also known as N-recognin-3, E3alpha-III, or zinc finger protein 650, is an E3 ubiquitin-protein ligase targeting the essential DNA repair protein APE1, also known as Ref-1, for ubiquitylation. It regulates cellular levels of APE1 and is required for genome stability. It also plays a regulatory role in sensory pathways, including olfaction. In Drosophila, UBR3 also regulates apoptosis by controlling the activity of Drosophila inhibitor of apoptosis protein 1 (DIAP1), which is required to prevent caspase activation. UBR3 contains an N-terminal ubiquitin-recognin (UBR) box, a C3H2C3-type RING-H2 finger, and a C-terminal UBR-specific autoinhibitory (UAIN) domain.
Statistics
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PSSM-Id: 438146
Aligned: 15 rows
Threshold Bit Score: 89.7594
Created: 24-Mar-2015
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-H2 fingers with bound zinc
  • Comment:C3H2C3-type RING-H2 finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-H-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #                                                                          
Q6ZT12       1234 YDCVICGQSgpssedrptglvvllqassvlgqcrdnvepkklpiseee---qiypwdtcaavhdvrlsllqryfkdsscl 1310 human
ELU10689     1243 FDCCICNQStastdqrlvglvanlqstsilgnrrhatdavhlplrep-----egtrgtcaedfhnrftslvqefeetscl 1317 Capitella teleta
EEC13437      169 YECIICSQTssstedrpigmvvllqatsvlghaqeaeeearklpctdeerlllledssraahmklrfdglarhfddhsws 248  black-legged ...
XP_005824213 1120 VKCVICSLYaspstsepvglvcfmensnvfakhhrr--------------------------arekffggrlqgggaeva 1173 Guillardia th...
XP_013419454  993 YDCVICNQTtpstpdrpvgmvallqatsvlghrrqveevrtmptseeem-rqvrestncgqvqaqrlrkmvtyfeesscl 1071 Lingula anatina
XP_017213227 1198 YDCVICGQSgpstedrptglvvllqassvlghrcrsdmpkrlpttdee---hiypedtcgathdvrlslmqryfkdsscl 1274 zebrafish
XP_018092350 1195 YDCVICGQSgpstvdrplglvvllqassvlghrrkstepkklptteee---qiyqegtcsaandvklailqryfkdsscl 1271 African clawe...
XP_015145155 1212 YDCVICGQSgpstedrptglvvllqassvlgqcrnstepkklptteee---qiypwdtcaalhdvrlttlqryfkdsscl 1288 chicken
XP_012558942 1239 YECVICFQStestekrpiglvvflqpstvlayrvsqtseynemc-----------kfretcgnlvqqretelskisgsfq 1307 swiftwater hydra
XP_002901210  137 DSCAECGLCrlpcdprsressfglvgmimptnmpqriekgs----------------snsdvrpaassrlpslrvlkpgs 200  Phytophthora ...
Feature 1                        # #  #  #                                    #  #         
Q6ZT12       1311 lavsigwegGVYVQTCGHTLHIDCHKSYMeslrndqv-----------lqgfsvdkGEFTCPLCRQFANSVLP 1372 human
ELU10689     1318 lsvnigwrgGVHAQTCGHYVHLDCLALYIeslktqsq-----------sqsirvgdGEFWCPTCRNLSNTALP 1379 Capitella teleta
EEC13437      249 qsvnigwegGVHVQSCGHYIHVDCHKSYMlsqkqsqr-----------lqtvaverGEYWCPLCRQLANSVLP 310  black-legged tick
XP_005824213 1174 tnmqvhsspNLFFQSCGHYIHVSCFNSYLdslshpeknasll--trtnlgyqeaknGNFFCPLCRQMANALVP 1244 Guillardia theta CCM...
XP_013419454 1072 qsmnigwegGVAAQTCGHYLHIDCHGSYMesviqdrnl----------ahglvvykGEYWCPLCRQLANAVFP 1134 Lingula anatina
XP_017213227 1275 qsvsigwdgGVYVQTCGHTLHIDCHKSYMeslrndqv-----------lqgisvdkGEFTCPLCRQFANSVLP 1336 zebrafish
XP_018092350 1272 qsvsvgwegGVYVQTCGHTLHIDCHKSYMeslrndqv-----------lqgfsvekGEFTCPLCRQFANSVLP 1333 African clawed frog
XP_015145155 1289 qavsigwegGVYVQTCGHTLHIDCHKSYMeslrndqv-----------lqgfsvdkGEFTCPLCRQFANSVLP 1350 chicken
XP_012558942 1308 laleigsdvGINVQTCGHFVHIDCHQAYFqtlqddn-------------qlinitkGEFLCPLCRGFSNEVLP 1367 swiftwater hydra
XP_002901210  201 tdemrlqlaDSVIWSCGHAIHHSCLKAYLmslwkqkhgrnplemasgedrllserdLEFVCPICRRLSNCLVP 273  Phytophthora infesta...

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