2D8S,2M6M


Conserved Protein Domain Family
RING_CH-C4HC3_MARCH

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cd16495: RING_CH-C4HC3_MARCH 
Click on image for an interactive view with Cn3D
RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH proteins (MARCH)
This family of membrane-associated E3 ubiquitin ligases consists of 11 members in mammals (MARCH1-11), which are characterized by containing an N-terminal C4HC3-type RING-CH finger, also known as vRING or RINGv, a variant of the C3H2C3-type RING-H2 finger). Most family members have hydrophobic transmembrane regions and are localized to the plasma membrane and intracellular organelle membrane. Only MARCH7 and MARCH10 are predicted to have no transmembrane spanning region. MARCH proteins have been implicated in mediating the ubiquitination and subsequent down-regulation of cell-surface immune regulatory molecules, such as major histocompatibility complex class II and CD86, as well as in endoplasmic reticulum-associated degradation, endosomal protein trafficking, mitochondrial dynamics, and spermatogenesis.
Statistics
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PSSM-Id: 438158
Aligned: 53 rows
Threshold Bit Score: 53.5058
Created: 29-Mar-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:2D8S; Homo sapiens MARCH8 binds two Zn2+ ions through its RING-HC finger.
    View structure with Cn3D
  • Comment:RING-CH finger (C4HC3-type)
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.
  • Comment:The RING fingers found in MARCH proteins have an unusual arrangement of zinc-coordinating residues: The conserved helix complete with tryptophan at the C-terminal end is present but the cysteines and histidines are arranged in the sequence as C4HC3-type, rather than the typical C3H2C3-type in RING-H2 finger.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                  # #       #  #                #  # 
2D8S_A        18 CRICHcegd-----despLITPCHCtgslHFVHQACLQQWIkssd----trcCELCK 65  human
Q9FWY0        20 CRICHeeea------esyFEAPCSCsgtiKFAHRDCIQRWCdekg----ntiCEICL 66  thale cress
O64633        74 CRVCLqdke------evlIELGCQCrgglAKAHRSCIDAWFrtkg----snqCEICQ 120 thale cress
Q9FIL2        81 CRICHlplet---nnglpLQLGCSCkgdlGVAHSKCAETWFkikg----nmtCEICG 130 thale cress
Q9FYM9       249 CRICMvemee----deeaFKMECMCkgelALAHKTCTIKWFtikg----nitCDVCK 297 thale cress
ABR17862      75 CRICQeede------drsMEIPCACsgsmKYAHRKCVQRWCnekg----dttCEICQ 121 Sitka spruce
XP_001697579  38 CRICLeeda------lrnLEVPCACagtsKYAHHECIQRWInekg----nlrCEICD 84  Chlamydomonas reinhardtii
KDN49285     100 CRICLagaeee--telgrLISPCLCrgsiRYVHVNCLKQWRtmsqsrgafwsCPQCG 154 Rhizoctonia solani AG-8 WAC10335
EWC47670      76 CRICLdtstedvdpelgrLISPCRCkgsaRYVHEECLRLWRlhsandlsfykCPTCH 132 Drechslerella stenobrocha 248
XP_024403215 241 CRICMdslte---dhgeiLKMECRCrgemALAHKECAFKWFgikg----drvCDVCG 290 Physcomitrium patens

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