2YSL,2YSJ


Conserved Protein Domain Family
RING-HC_TRIM31_C-V

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cd16582: RING-HC_TRIM31_C-V 
Click on image for an interactive view with Cn3D
RING finger, HC subclass, found in tripartite motif-containing protein 31 (TRIM31) and similar proteins
TRIM31 is an E3 ubiquitin-protein ligase that primarily localizes to the cytoplasm, but is also associated with the mitochondria. It can negatively regulate cell proliferation and may be a potential biomarker of gastric cancer as it is overexpressed from the early stage of gastric carcinogenesis. TRIM31 is downregulated in non-small cell lung cancer and serves as a potential tumor suppressor. It interacts with p52 (Shc) and inhibits Src-induced anchorage-independent growth. TRIM31 belongs to the C-V subclass of the TRIM (tripartite motif) family of proteins that are defined by an N-terminal RBCC (RING, Bbox, and coiled coil) domain, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, Bbox1 and Bbox2, and a coiled coil region, as well as an uncharacterized region positioned C-terminal to the RBCC domain.
Statistics
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PSSM-Id: 438244
Aligned: 8 rows
Threshold Bit Score: 67.9302
Created: 14-Apr-2016
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:2YSL; Homo sapiens TRIM31 binds two Zn2+ ions through its RING-HC finger.
    View structure with Cn3D
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #           # #  #  #             #  #
2YSL_A        20 EVICPICLDILqKPVTIDCGHNFCLKCITQIGEtscGFFKCPLC 63  human
2YSJ_A        20 EVICPICLDILqKPVTIDCGHNFCLKCITQIGEtscGFFKCPLC 63  human
Q9BZY9        13 EVICPICLDILqKPVTIDCGHNFCLKCITQIGEtscGFFKCPLC 56  human
AAG50165      13 EVICPICLDILqKPVTIDCGHNFCPQCITQIGEtscGFFKCPLC 56  human
XP_004694772  13 EVTCPVCIDILqDPVTLDCGHNLCLRCISRIAEetsKLCKCPLC 56  star-nosed mole
XP_012807513   8 EVNCPICMDTLqEPVSIDCGHTFCSQCITEAGNtsnSLFQCPLC 51  lesser Egyptian jerboa
BAD96449      13 EVICPICLDILqKPVTIDCGHNFCLKCITQIGEtscGFFKCPLC 56  human
Q8R0K2        13 EVTCPICMEILqDPVTIDCGHNFCLQCISQVGKt-sEKIQCPLC 55  house mouse

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