Conserved Protein Domain Family
RING-HC_TRIM2_like_C-VII

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cd16586: RING-HC_TRIM2_like_C-VII 
RING finger, HC subclass, found in tripartite motif-containing protein TRIM2, TRIM3, and similar proteins
TRIM2, also known as RING finger protein 86 (RNF86), is an E3 ubiquitin-protein ligase that ubiquitinates the neurofilament light chain, a component of the intermediate filament in axons. Loss of function of TRIM2 results in early-onset axonal neuropathy. TRIM3, also known as brain-expressed RING finger protein (BERP), RING finger protein 97 (RNF97), or RING finger protein 22 (RNF22), is an E3 ubiquitin-protein ligase involved in the pathogenesis of various cancers. It also plays an important role in the central nervous system (CNS). In addition, TRIM3 may be involved in vesicular trafficking via its association with the cytoskeleton-associated-recycling or transport (CART) complex that is necessary for efficient transferrin receptor recycling, but not for epidermal growth factor receptor (EGFR) degradation. Both TRIM2 and TRIM3 belong to the C-VII subclass of the TRIM (tripartite motif)-NHL family that is defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, Bbox1 and Bbox2, and a coiled coil domain, as well as a NHL (named after proteins NCL-1, HT2A and Lin-41 that contain repeats folded into a six-bladed beta propeller) repeat domain positioned C-terminal to the RBCC domain.
Statistics
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PSSM-Id: 438248
Aligned: 7 rows
Threshold Bit Score: 94.0546
Created: 28-Jul-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #           # #  #  #             #  # 
Q9C040        20 FLICSICLERYknPKVLPCLHTFCERCLQNYIPahsltLSCPVCR 64  human
O75382        19 FLVCSICLDRYqcPKVLPCLHTFCERCLQNYIPaqsltLSCPVCR 63  human
KFM56733      16 FLKCGVCLDRYenPKVLPCLHTFCERCLVTSMPaesltLSCPLCR 60  Stegodyphus mimosarum
ELU03406      15 FLSCAICLERYsrPKVLPCLHTFCEQCLQEYIPpqslsVACPICR 59  Capitella teleta
AAX20126      20 LLSCAICDQRYkdPKVLPCLHTFCELCLSNVIPseslsVTCPVCR 64  great pond snail
XP_002735026  18 FLKCGICLERYrtPKVLPCLHTFCQKCLQNYIPphslsLSCPICR 62  Saccoglossus kowalevskii
XP_013393197  72 FLSCGICLQQYtnPKVLPCLHTFCELCLYDYIPleslsVSCPLCR 116 Lingula anatina

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