Conserved Protein Domain Family
RING-HC_TRIM58_C-IV

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cd16606: RING-HC_TRIM58_C-IV 
RING finger, HC subclass, found in tripartite motif-containing protein TRIM58 and similar proteins
TRIM58, also known as protein BIA2, is an erythroid E3 ubiquitin-protein ligase induced during late erythropoiesis. It binds and ubiquitinates the intermediate chain of the microtubule motor dynein (DYNC1LI1/DYNC1LI2), stimulating the degradation of the dynein holoprotein complex. It may participate in the erythroblast enucleation process through regulation of nuclear polarization. TRIM58 belongs to the C-IV subclass of TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, Bbox1 and Bbox2, and a coiled coil region, as well as a B30.2/SPRY (SplA and ryanodine receptor) domain positioned C-terminal to the RBCC domain.
Statistics
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PSSM-Id: 438268
Aligned: 7 rows
Threshold Bit Score: 109.95
Created: 19-Apr-2016
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  #           # #  #  #                 #  #    
Q8NG06        12 EDARCPVCLDFLQEPVSVDCGHSFCLRCISEFCEKSDgaqggvYACPQCRGPF 64  human
XP_008708098  12 EEARCPVCLDFLQDPVSVACGHSFCLRCISEFCEKSDsaqgglYACPQCRGPF 64  polar bear
Q5NCC9        11 EEARCSVCLDFLQEPISVDCGHSFCLRCISEFCEKSDsaq-gvYACPQCRGPF 62  house mouse
XP_007483132  12 EEAKCPICLDFLQDPVSVDCGHSFCLQCITEFCEKSDssqgsvYSCPQCRSQF 64  gray short-tailed opossum
XP_004611670  12 EEARCPVCLDFLQEPVSVDCGHSFCLRCISEFCERAEpapggrFSCPQCRAPF 64  European shrew
XP_012506290  12 EEARCPVCLDFLQDPVSVDCGHSFCRGCVSELCARADgaqggvHACPQCRAPF 64  Coquerel's sifaka
XP_017514512  14 REARCAVCLDFLQEPVSVLCGHSFCRRCISEFCARTAcardglFACPQCRGPF 66  Malayan pangolin

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