Conserved Protein Domain Family
RING-HC_PCGF1

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cd16733: RING-HC_PCGF1 
RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
PCGF1, also known as nervous system Polycomb-1 (NSPc1) or RING finger protein 68 (RNF68), is one of six PcG RING finger (PCGF) homologs (PCGF1/NSPc1, PCGF2/Mel-18, PCGF3, PCGF4/BMI1, PCGF5, and PCGF6/MBLR). It serves as the core component of a noncanonical Polycomb repressive complex 1 (PRC1)-like BCOR complex that also contains RING1, RNF2, RYBP, SKP1, as well as the BCL6 co-repressor BCOR and the histone demethylase KDM2B, and is required to maintain the transcriptionally repressive state of some genes, such as Hox genes, BCL6 and the cyclin-dependent kinase inhibitor, CDKN1A. PCGF1 promotes cell cycle progression and enhances cell proliferation as well. It is a cell growth regulator that acts as a transcriptional repressor of p21Waf1/Cip1 via the retinoid acid response element (RARE element). Moreover, PCGF1 functions as an epigenetic regulator involved in hematopoietic cell differentiation. It cooperates with the transcription factor runt-related transcription factor 1 (Runx1) in regulating differentiation and self-renewal of hematopoietic cells. Furthermore, PCGF1 represents a physical and functional link between Polycomb function and pluripotency. PCGF1 contains a C3HC4-type RING-HC finger.
Statistics
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PSSM-Id: 438391
Aligned: 8 rows
Threshold Bit Score: 138.553
Created: 26-Jul-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure of Homo sapiens PCGF4 with bound Zn2+ ions thorugh its RING-HC finger
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #  #            # #  #  #          #  #                     
Q9BSM1        36 VKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQD 106 human
Q4QR06        34 VKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKYCPLCNIKIHETQPLLNLKLDRVMQD 104 African clawed frog
Q7ZYZ7        34 IKIKDLNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQD 104 zebrafish
XP_007904857  28 VKIKDLNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQD 98  elephant shark
XP_006826060  38 IKIRDVNPHVVCILCAGYFIDATTVTECLHTFCKSCIVKYLQTSKCCPMCNIKIHETQPLINLKADRTMQD 108 Saccoglossus kowalevskii
XP_003724093  13 LKIRELNQHIVCILCAGYYIDATTVTECLHTFCKSCIVKYLQTSKICPMCNQKVHETQPVLNLRPDRTMQD 83  purple sea urchin
KFM56645       7 VCIRDLNPQIVCILCAGYFIDATTITECLHTFCKSCIVKYLQTTKYCPMCNVKVHETQPLLNLKIDRTLQD 77  Stegodyphus mimosarum
XP_014339723   5 VKIKDLNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQD 75  coelacanth

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