1ZKH,3DBH,2BWF,1WGD,2L7R,1MG8,5XQM,3TIX,6BI8,6JH1,5CHW,1WH3,2KD0,3ZDM


Conserved Protein Domain Family
ubiquitin

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pfam00240: ubiquitin 
Click on image for an interactive view with Cn3D
Ubiquitin family
This family contains a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites.
Statistics
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PSSM-Id: 459726
Aligned: 60 rows
Threshold Bit Score: 52.9437
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1ZKH_A   6 VQVPNmqDKTEwklngQVLVfTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYY-NMANG-AVIHLALK 83  human
O42967   6 IRVTTvdQ--------KVGIfQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEIlHDATDlVTFHLVIA 77  Schizosaccharomyces p...
Q9UMX0  39 VTVKT---PKE-----KEEF-AVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH-GIHDG-LTVHLVIK 107 human
Q9VWD9  11 VVVKT---PKD-----KKTV-EVDEDSGIKDFKILVAQKFEAEPEQLVLIFAGKIMKDTDTLQMH-NIKDN-LTVHLVIK 79  fruit fly
1MG8_A   5 VFVRF--NSSY-----GFPV-EVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC-DLEQQ-SIVHIVQR 74  house mouse
5XQM_A  22 IKIKVvgQDSN-----EVHF-RVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTL-EMEDD-DVIEVYQE 93  Caenorhabditis elegans
P63166  22 IKLKVigQDSS-----EIHF-KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEE-DVIEVYQE 93  house mouse
3TIX_C  58 INLKVs-DGSS-----EIFF-KIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDL-DMEDN-DIIEAHRE 128 Schizosaccharomyces p...
O13351  36 INLKVvgQDNN-----EVFF-KIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAEL-DMEDG-DQIEAVLE 107 Schizosaccharomyces p...
P55852  18 INLKVkgQDGN-----EVFF-RIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDEL-DMEDG-DEIDAMLH 89  thale cress
1ZKH_A  84 ER 85  human
O42967  78 VF 79  Schizosaccharomyces pombe 972h-
Q9UMX0 108 TQ 109 human
Q9VWD9  80 AP 81  fruit fly
1MG8_A  75 PR 76  house mouse
5XQM_A  94 QL 95  Caenorhabditis elegans
P63166  94 QT 95  house mouse
3TIX_C 129 QI 130 Schizosaccharomyces pombe 972h-
O13351 108 QL 109 Schizosaccharomyces pombe 972h-
P55852  90 QT 91  thale cress
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