Conserved Protein Domain Family
Glyco_hydro_53

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pfam07745: Glyco_hydro_53 
Glycosyl hydrolase family 53
This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Statistics
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PSSM-Id: 311610
Aligned: 12 rows
Threshold Bit Score: 381.753
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8G7K7        53 IGGMDVSSMLS-----------------------------------------LEESGVT--FKNANGEVEDLFTLLKE-S 88   Bifidobacteriu...
Q9KBA5       222 MKGVDISSIIA-----------------------------------------LEQSGVT--FYDDHGNVQDIFQTLQE-A 257  Bacillus halod...
O07013        54 IKGADVSSVIA-----------------------------------------LENSGVT--FYNTNGKRQDIFTTLKQ-A 89   Bacillus subti...
Q8EVD3        41 IKGVDISSYVNvtsnflneqnikkddkssysykeyetenitinntqqtiqdyIDNNLYSyiDDNGNRKYQNFFKILKDqG 120  Mycoplasma pen...
XP_003659608  22 YRGVDWSSVVV-----------------------------------------EERAGVS--YKNTNGNAQPLENILAA-N 57  
EHA19188      20 YRGADISSLLI-----------------------------------------EEDAGIS--YKNLNGETQALEDILVN-N 55  
Q9X0S8        30 IFGMDVSMLYE-----------------------------------------IEQLGGK---YFENGVEKDCLEILKN-H 64   Thermotoga mar...
P48841        28 YVGADLSYVNE-----------------------------------------MESCGAT---YRDQGKKVDPFQLFAD-K 62   Cellvibrio jap...
Q8PB67        31 YLGADLSYVNE-----------------------------------------MEECGVQ---YRENGVVKDPFELFHT-H 65   Xanthomonas ca...
Q82NH9       184 IKGSDISSLAK-----------------------------------------SEAFGGV--YKTGSGTTGDALTILKS-A 219  Streptomyces a...
Q8P4T2        30 AKGADVSWINQ-----------------------------------------QAAANPPqvFQDASGKTTDFIKLFKD-V 67   Xanthomonas ca...
Q97G04        35 ANGADIGWLNQ-----------------------------------------LENNGVK--WQDTNGQRKDALQILKN-H 70   Clostridium ac...
Q8G7K7        89 GVNYVRLRVWNDPFTadgq------gygGGNVNADRALTMAKRATAAGLKVL-VDFHYSDFWADPSKQQVPKAWKSF-EG 160  Bifidobacteriu...
Q9KBA5       258 GVNYIRIRIWNDPYDtnen------gygGGNNDLEKAIEIGKRATKNGMRVL-ANFHYSDFWADPAKQKPPKAWETL-SF 329  Bacillus halod...
O07013        90 GVNYVRVRIWNHPYDsngn------gygGGNNDVQKAIEIGKRATANGMKVL-ADFHYSDFWADPAKQKVPKAWANL-SF 161  Bacillus subti...
Q8EVD3       121 DVNSIRLRLWNDPYDenkks---ymgelEGVNDLDTDIYIMKQAIKEGINHFnLDFHYSDFWADPGHQINPKAWDGL-DT 196  Mycoplasma pen...
XP_003659608  58 GVNTVRQRVWVNPAD--------------GNYNLDYNIAIAKRAKAAGLGVY-IDFHYSDTWADPAHQTMPAGWPS--DI 120 
EHA19188      56 GVNSIRQRVWVDPSD--------------GSYDLDYNLKLAKRVQAAGMSIY-LDLHLSDTWADPSDQTTPTGWSTT-DI 119 
Q9X0S8        65 GINWIRLRVWNDPRDengn------plgGGNCDYLKMTEIAKRAKNLGMKVL-LDFHYSDWWADPGKQNKPKEWEYL-HG 136  Thermotoga mar...
P48841        63 GADLVRVRLWHNATW-------------TKYSDLKDVSKTLKRAKNAGMKTL-LDFHYSDTWTDPEKQFIPKAWAHItDT 128  Cellvibrio jap...
Q8PB67        66 GANLVRVRLWNDARW-------------TKYSDLSDVKKTIRRARAQGMQVL-LDLHYSDDWADGEKQLIPKAWASItDT 131  Xanthomonas ca...
Q82NH9       220 GMNYARLKVWVNPAD--------------GYNNKTRVLAMAKRVKAQGMKLL-VDFHYSDTWADPGAQSKPAAWAGH-SY 283  Streptomyces a...
Q8P4T2        68 GGNAIRLRVWVNPQG--------------GWNDGRDTLDKAKRAAAQGMRIM-IDFHYSDSWADPGKQTKPAAWASH-SV 131  Xanthomonas ca...
Q97G04        71 GINSVRLRVFVNPPSnfvwtkndgskclLGYGDTKGVVYMAQRAKNLGMKVM-IDFHYSDHFADPAYQDKPAAWIND-NF 148  Clostridium ac...
Q8G7K7       161 DADKTAdtVYDYTKQTLTTF-KQAGVDVGMVQVGNETTAKIAG------------ISGWDGMSKVFSAGSKAIRE----- 222  Bifidobacteriu...
Q9KBA5       330 EDKKQA--LYEFTKESVKTM-LDEGIDIGMVQVGNETTNAFVG------------ETNWEKMSELFNEGSRAVRE----- 389  Bacillus halod...
O07013       162 EAKKAK--LYEYTKQSLQKM-IKEGVDIGMVQVGNETTGGFAG------------ETDWTKMCQLFNEGSRAVRE----- 221  Bacillus subti...
Q8EVD3       197 EGIKKA--IKDFTYNSLVKIyQETGVLPAQVQIGNEITKGFVWgnddskfesdylKPDVS--IKYLRSAIEAVNEaqeyi 272  Mycoplasma pen...
XP_003659608 121 DNLSWK--LYNYTLDAANKL-QNAGIQPTIVSIGNEIRAGLLWpt--------grTENWANIARLLHSAAWGIKDs---- 185 
EHA19188     120 DTLTWQ--LYNYTLDVCNTF-AENDIDIEIVSIGNEISSGLLWpl--------gkTSNYDNIAKLLHSGAWGVKDs---- 184 
Q9X0S8       137 ELLERA--VYSYTKLVLNHM-RRNGALPDMVQVGNEVNNGFLWpdgki---sgegAGGFDGFTRLLKAAIKAVRE----- 205  Thermotoga mar...
P48841       129 KELAKA--LYDYTTDTLASL-DQQQLLPNLVQVGNETNIEILQaedt----lvhgIPNWQRNATLLNSGVNAVRDys--- 198  Cellvibrio jap...
Q8PB67       132 DELART--LYGFTYDTLSAL-DRAGLMPELVQVGNESNSDLMDsipw----dkkrPIDWQRNAKLFNAGIKAVRDis--- 201  Xanthomonas ca...
Q82NH9       284 SQLKTD--VYNHTYDVLSAL-KSQGTTADMVQIGNEINGGMLWse--------gsTDNWPQLAGLLNSGYSATKA----- 347  Streptomyces a...
Q8P4T2       132 AQLNTD--VYNHTQGILKYL-KDNGITVTWVQVGNEINSGMLWdq--------gkTPNFANLGQFINSGYNATKA----- 195  Xanthomonas ca...
Q97G04       149 NQLQKD--VYSHTSYVMTAL-KNAGITPDWVQVGNETNSGMLWpd--------gnYRNFNKWAALINQGYSAIKY----- 212  Clostridium ac...
Q8G7K7       223 -----VLPEAKVVIHFTNPEKAGTYATYAKQLSNH--N----VDYDVFASSYYP---FWHG--TT-----ENLTSVLKNV 281  Bifidobacteriu...
Q9KBA5       390 -----VDETILVALHFTNPETPGRYETIAQRLYEY--N----VDYDVFASSYYP---FWHG--TL-----NNLTTVLSHV 448  Bacillus halod...
O07013       222 -----TNSNILVALHFTNPETAGRYSFIAETLSKN--K----VDYDVFASSYYP---FWHG--TL-----QNLTSVLKAV 280  Bacillus subti...
Q8EVD3       273 nktynKNTNIKIAVHLESLSSQTSKKAISTFLNDQfiD----ENLDIVGVTYYP---FWSL--NL-----EKFRQDFSSF 338  Mycoplasma pen...
XP_003659608 186 ----sLSPKPKIMIHLDNGWDWGTQNWWYTNVLKQ--GtlelSDFDMMGVSFYP---FYSSsaTL-----SALKSSLDNM 251 
EHA19188     185 ----nQATTPKIMIHLDNGWDWEEQEYFYKTVLAT--GsllsTDFDLMGVSYYP---FYNSeaTL-----SALQTSLTNM 250 
Q9X0S8       206 -----VDPDIKIVIHLAEGGNNSLFRWFFDEITRR--N----VDFDVIGVSYYP---YWHG--TL-----EDLKNNLYDI 264  Thermotoga mar...
P48841       199 ---kkTGKPIQVVLHIAQPENA---LWWFKQAKEN--Gv---IDYDVIGLSYYP---QWSEy-SL-----PQLPDAIAEL 258  Cellvibrio jap...
Q8PB67       202 ---arSTIKPRVMLHIAQPENV---EPWFAAAAKA--Gv---TDFDLIGISYYR---KWSSq-SM-----AELGKTIKRL 261  Xanthomonas ca...
Q82NH9       348 -----VSSSTVVALHLAKGGDLAGTRAWFDKAVAG--G----VNFDAIGLSYYG---YWHG--SL-----YDFQTTLDDA 406  Streptomyces a...
Q8P4T2       196 -----VYPNAKVIVHLANGYDNANFRWFFDNLRSA--G----GKWDVIGMSHYPpvgSWQD--YN-----ARLDTNLRDM 257  Xanthomonas ca...
Q97G04       213 -----VSPTSKVIIHLSSGANNSLYRSVFDGLTKA--G----AKFDVIGMSYYP---YWDK--VNytqniNNLSYNLNDM 276  Clostridium ac...
Q8G7K7       282 ASTYKKDVMVAETSWAYTLDDGDDDSNTVPSkvtaDNLKKYDISPQGQADEIRAVAEAVNNIGdndgdgeNDGLGVFYWE 361  Bifidobacteriu...
Q9KBA5       449 ADTYDKLVMVAETSYTYTREDGDGHANTAPSs---GQTLNYPITVQGQGTAVRDVIEAVVNVG-------KSGMGVFYWE 518  Bacillus halod...
O07013       281 ANTYGKKVMVAETSYTYTAEDGDGHGNTAPKs---GQTLPYPISVQGQATAVRDVMEAVANTG-------KAGLGVFYWE 350  Bacillus subti...
Q8EVD3       339 WTKLGKEIIFEEYSTPYTSDNTGYTGDLDYKt----nSNSIPTTSSGQVVMLNAFLNLISQLTp------DKETGFYYWE 408  Mycoplasma pen...
XP_003659608 252 AKTWNKEIAVVETNWPIS--------CPNPRysfpSDVKNIPFSPEGQTTFITNVANIVSSV--------SRGVGLFYWE 315 
EHA19188     251 QSNYDKSVVVVETNWPVS--------CPDPEysfpSDLSSIPFSAAGQEEFLEKLAEVVEGV--------TDGLGIYYWE 314 
Q9X0S8       265 ATRYNKDVLVVETAYAWTLEDGDGYPNIFNGee-mELTGGYKATVQGQATFLRDLIEVVNSVPn------GHGLGIFYWE 337  Thermotoga mar...
P48841       259 QNTYHKPVMIVETAYPWTLHNFDQAGNVLGEk---aVQPEFPASPRGQLTYLLTLTQLVKS---------AGGMGVIYWE 326  Cellvibrio jap...
Q8PB67       262 RGRFDADVVVVETAYPWTLASGDTSHNLLGEd---sLIAGYPATPQGQARYMVDLTQLVID---------TGGAGVVYWE 329  Xanthomonas ca...
Q82NH9       407 ASRYGKPVFLAETAYPFRLDSDDSLTNQIDTt--gELVSGYAATTAGQSAWLRDVMNIVEAVPn------GRGLGVFYWE 478  Streptomyces a...
Q8P4T2       258 ISRYGSDVIVAEVGMDWQ-------------------------QAATTRAMLGNLITRSNAIg-------SRMLGIFYWE 305  Xanthomonas ca...
Q97G04       277 ASRYHKQVMICEIG-------------------------GLENDSTNTYNMIKQVISKVKAVPg------SNGLGVFYWE 325  Clostridium ac...
Q8G7K7       362 PAWVPVGtggkdnaelvdtwnkygggwateaageydpnDAGLYWGGSGVDNQ-ALFD--FDGKALASLPTF 429  Bifidobacterium longum
Q9KBA5       519 PAWIPVGppesieqnkqlwerd-gsgwatsyaaaydpeDAGEWYGGSAVDNQ-ALFD--FQGHPLPSLHVF 585  Bacillus halodurans
O07013       351 PAWIPVGpktqieknkvlwety-gsgwassyaaeydpeDAGKWYGGSAVDNQ-ALFD--FNGHPLPSLQVF 417  Bacillus subtilis subsp...
Q8EVD3       409 PGWLYKGkqtwasqsg--------------inyitnsdKSLDWKYGYNWSNQ-GLFD--RNGIMLPSLKVL 462  Mycoplasma penetrans
XP_003659608 316 PAWIHNA-------------------------------N-----LGSSCADN-TMFS--QSGQALSSLSVF 347 
EHA19188     315 PAWVDNA-------------------------------A-----LGSSCADN-LMVDi-DTDEVLESVTVF 347 
Q9X0S8       338 GDWIPVRg------------------------------AGWKTGEGNPWDNQ-AMFD--FSGNALPSLNVF 375  Thermotoga maritima
P48841       327 PAWVSTR-------------------------------CRTLWGKGSHWENA-SFFDatRKNNALPAFLFF 365  Cellvibrio japonicus Ue...
Q8PB67       330 PAWTSSS-------------------------------CKTRWGTGSSWENA-SFFDfqHNNEVLPAIDFM 368  Xanthomonas campestris ...
Q82NH9       479 ATWTAVTgngwd---------------------------padaaSGNGWENQ-ALFG--YDDKALPAMTLF 519  Streptomyces avermitilis
Q8P4T2       306 PNAYP-------------------------------------GWQGYTMGAV----D--NNGRLTEALQAF 333  Xanthomonas campestris ...
Q97G04       326 PEANSSV-----------------------------------LPDAYPLGSTsKVSN--NVLRFTNAINAF 359  Clostridium acetobutylicum
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