2VNO


Conserved Protein Domain Family
NPCBM

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pfam08305: NPCBM 
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NPCBM/NEW2 domain
This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins. This domain has also been called the NEW2 domain (Naumoff DG. Phylogenetic analysis of alpha-galactosidases of the GH27 family. Molecular Biology (Engl Transl). (2004)38:388-399.)
Statistics
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PSSM-Id: 429907
Aligned: 98 rows
Threshold Bit Score: 86.8443
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2VNO_B            9 RDVYLSDLDW--LNATHGddtKSk-IVQKNHPFtpgnnnqsTK---ISLKMEdgsisEFEKGLGTIAGSPs---tITYDI 79   Clostridium...
CAZ94419        512 kfpfLSGLESisESAHNG--------VKRDKNY--------IGe-nIVINGK-----AFQKGLMVCPVGKtseghIEFNI 569 
CDB04647        175 eYIRLSSLEI--EKTKCG---WEnhTPKKDKSI--------DGn-nITIGGK-----VYESGVGTHGPSQ-----IIIKL 230 
jcvi:FSU_2145   444 NQFYLTDLPIdhFTQQYG-------RPRVNRAV--------DGa-tLTVRGQ-----QYKNGIGTHANSE-----LFFKM 497 
CDA09916        655 DYDYLSDFDW--TSVETQ---WG--TPRKNSNI--------QG-------MVhnnvkKFKKGVGIHANGK-----ITYDL 707 
jgi:Psta_3476   485 sSCWVSDTAW--KSAQVG---WG--RPRANRLP--------SDsmaMVVGGQ-----LFARGLYAHAPSK-----YTYEL 539 
Q7UJN6          503 KSIWLSTIRP--QSSEVG---WL--RATYNSVP--------DKnrlLSLGGD-----YFAHGIYAHAPAK-----HVYEL 557  Pirellula sp.
jgi:Plabr_2696  467 TQVLLSQCLP--EQEQVG---WM--RPVYDRLP--------GAepmLAAGDR-----LFETGLYAHAPAS-----HVYRL 521 
jgi:Plim_2846   489 KESSLTSYRA--DSAKVG---WM--QPAFNRLP--------NAsilLECRGE-----IFAKGIYAHAPAE-----HVYSL 543 
CDA62739       1449 DELYVSDMDW-----TVDqggYF--ENTRDACG--------CGn-pMAVY-VegtkqSFDKGVAMHAPAE-----LGVNL 1506
2VNO_B           80 SGAg-VTKFFSYLGIDRSAnpinEQYAKvDKIEVVV-DG-----KVIYSTinqfpNGLTYETPAIKVDLNIp----ENAK 148  Clostridium...
CAZ94419        570 SQYqdVKGITATIGIDDMV----NHNGS-VVFIVRTyQNgl--wTDLYTS-----ETLTGNDDGVDIDIDFp----HPTS 633 
CDB04647        231 NGS--VTDFYTVLGVDDEV----KEAGN-FDYHVYV-KAeggatEDVAKG-----TINRFSN----QSVDIhadnlSGWK 293 
jcvi:FSU_2145   498 PAD--ADSLEFVVGIDDEA----GGGGS-VRFIVAT-PE-----ETLWKG-----DVVFGNRKPQAGKVYI-----GGKQ 554 
CDA09916        708 SDKd-YDKFEALIGVDTAVg---ENNNSsVTFKIVG-DG-----KTLATT-----KVMNYYDNLAYINVPV-----KGIK 767 
jgi:Psta_3476   540 GGK--WKRLSGVAGLAD------GNDGS-VVFVIVG-DG-----KELWRS-----KKVADAS-LPAFDVDI-----AGVQ 593 
Q7UJN6          558 DGN--WKRLRGRSGIQG------NLFGQ-VDFEIIG-DG-----KSLWKA-----TRVTAGQ-GNAFDIDV-----SKVQ 611  Pirellula sp.
jgi:Plabr_2696  522 DGR--WKKLEGFAGIAA------GKNGS-VQFEFKV-DG-----KTRWKS-----RILRGGE-LIAFEVDL-----TGGK 575 
jgi:Plim_2846   544 GKK--WKQLAGKVGLAT------GSGGS-VIFEIRG-DG-----KTLWKS-----PIVKADQ-LVSFQVDV-----SDVN 597 
CDA62739       1507 EGKg-VSRFTARIGISADQt--lGNKAD-VNYVIKG-DG-----KELYRK-----DHVISNGQSYLVDIDV-----SKVK 1566
2VNO_B          149 RLQLKSYA----GEKtwGDEVVYADAKFT 173  Clostridium perfringens
CAZ94419        634 KVRLITTDgg-dNAN--SDHAVWGNIQFk 659 
CDB04647        294 YLYLETSNgtdgTNT--CDHVDWANAYLv 320 
jcvi:FSU_2145   555 TIILKADAdgdnA----YDHADWLNVIVT 579 
CDA09916        768 ELVIEVHDgg-nGNA--CDHCIIVNPKLT 793 
jgi:Psta_3476   594 ELLLQVEDag-nGNS--SDWGVWADPQLT 619 
Q7UJN6          612 TLTLKVTDgg-nGRG--GDWGIWVEPMLT 637  Pirellula sp.
jgi:Plabr_2696  576 QLELLTHPtd-dGAN--SDWGLWLKPTLS 601 
jgi:Plim_2846   598 QLQLVTSPse-dGTY--QDWGLWLDPVLS 623 
CDA62739       1567 DLRLIVEE----GDAdyNDHALWADAKFT 1591
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