Conserved Protein Domain Family
GlnD_UR_UTase

?
pfam08335: GlnD_UR_UTase 
GlnD PII-uridylyltransferase
This is a family of bifunctional uridylyl-removing enzymes/uridylyltransferases (UR/UTases, GlnD) that are responsible for the modification (EC:2.7.7.59) of the regulatory protein P-II, or GlnB (pfam00543). In response to nitrogen limitation, these transferases catalyze the uridylylation of the PII protein, which in turn stimulates deadenylylation of glutamine synthetase (GlnA). Deadenylylated glutamine synthetase is the more active form of the enzyme. Moreover, uridylylated PII can act together with NtrB and NtrC to increase transcription of genes in the sigma54 regulon, which include glnA and other nitrogen-level controlled genes. It has also been suggested that the product of the glnD gene is involved in other physiological functions such as control of iron metabolism in certain species. The region described in this family is found in many of its members to be C-terminal to a nucleotidyltransferase domain (pfam01909), and N-terminal to an HD domain (pfam01966) and two ACT domains (pfam01842).
Statistics
?
PSSM-Id: 462432
Aligned: 77 rows
Threshold Bit Score: 89.5613
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q7VKZ4   288 EMKQKISREVLRRNLQD--------NIKLGAGGIREIEFIVQTFQMIRggrdkilqqrsLLQVLPHLVTLNLLTKQQAKH 359  [Haemophilus] ducr...
Q3IIZ7   176 FFLAKVQEQHLRHRKCHgtaynlepNIKENPGGLRDLQTIIWVAKKHF-----------RAETLQELISHGYLTHEEFQE 244  Pseudoalteromonas ...
ABM04706 178 FFTVKKEEQIKRHKNCRgdgynlepDLKNGSGGLRDIQTIAWIAKRHF-----------GVNSLIELTGSNYITQGEYRE 246 
P43919   172 FFNAKVQEQIERYQRYHntaynlepDIKFSPGGLRDLHLLYWVALRHS-----------GALTLEAILQSGFIYPQEYQQ 240  Haemophilus influe...
BAJ00616 174 FFKAKVSEQDERHLKAQgsafslepNLKNSPGGMRDIQTLIWVTRKYF-----------AAEDMAALRRFGFFTADEYTE 242 
BAJ01201 165 fFIAKRDEQIARHARASafd--lepNLKTCPGGLRDIHTVAWVAMRHF-----------DAAKAEDLVEHGFLDKDELEE 231 
Q5QXT0   184 FYQAKLDEQKQRHQQYHstsynlepNIKSSPGGLRDIQTVGWIAKRHF-----------RTHSDENLVEYGYMTADEFVE 252  Idiomarina loihien...
Q6FAM5   175 FFDAKMEEQAKRHAQHNntesnlepDIKNAPGGIRDMNQIGWIAKRHF-----------RVNRIYDLVHLGFITEYELKV 243  Acinetobacter bayl...
Q0VQF9   182 FFAAKWQEQTTRHKRFNdteynlepDLKNAPGGLRDVQMIAWVAKRHF-----------NTDSLEALVSNGFLTPEEYGV 250  Alcanivorax borkum...
Q3JCX7   191 FFLAKQAEQITRHHKYHdtaynlepNLKEGPGGLRDIQMIQWVSKRYF-----------NTWSFDSLLQHDFLTVSERKE 259  Nitrosococcus ocea...
Q7VKZ4   360 LGDAYIFHRQLENVLQAIDDQQTQSLPADakNQARIMYACQsywqkdqqnqplmieyhW------QSWQQ---FLSTLAQ 430  [Haemophilus] ducr...
Q3IIZ7   245 LSECLENLWNIRFALHLAAGRSENRLLFD--HQPQAAEILG-----------------Fg----sDGKSSverMMKRLFR 301  Pseudoalteromonas ...
ABM04706 247 LVDCQAMLWTIRFALHSVTNRPDNRLLFD--YQTEVARMLG-----------------Ys----gSGNTAieqMMKAFYQ 303 
P43919   241 LQESRAFLFKVRFALHLILKRYDNRLLFD--RQIKVSELLG-----------------Fr----gEGNPAvekMMKCFFQ 297  Haemophilus influe...
BAJ00616 243 LLESQHFIWRARWALHAAAERSQNRLLIS--LQSDVARLMG-----------------Fg----dNSHLAiekMMRQLYR 299 
BAJ01201 232 LLECQYFLWELRFALHLISGRDENRLLFD--LQRQVADLMG-----------------Ye----dSTQLGveqMMKRYYR 288 
Q5QXT0   253 LRDCMNWLWRIRFALHLEAGKREDRLLFD--FQPGVAVRLG-----------------Yg----nDGKASvetMMKDYFK 309  Idiomarina loihien...
Q6FAM5   244 LEEAESFLWEIRHHLHLLSKRDENRLLFD--HQREIAAKFG-----------------YtraegqPVNFAveqFMKRYYR 304  Acinetobacter bayl...
Q0VQF9   251 LRKCLDYLWEVRWQLHVQTERNENRLLFD--HQRQLADRLG-----------------Hen---sSANLAvehFMKDFYR 308  Alcanivorax borkum...
Q3JCX7   260 LLESQSFLWQLRYGLHTLTGRREDRLLFD--HQIALAKQLG-----------------Yhd---qGPHLAveqLMKDYYR 317  Nitrosococcus ocea...
Q7VKZ4   431 HQQHVRVIFNQL 442  [Haemophilus] ducreyi 35000HP
Q3IIZ7   302 IMSRVRELNLML 313  Pseudoalteromonas translucida TAC125
ABM04706 304 TIHRVKELNEML 315 
P43919   298 ALHRISLISNLL 309  Haemophilus influenzae Rd KW20
BAJ00616 300 AMRRISELNQML 311 
BAJ01201 289 TVRRVMELNQML 300 
Q5QXT0   310 VVLRVSELNQML 321  Idiomarina loihiensis L2TR
Q6FAM5   305 TAQQVSTLNEML 316  Acinetobacter baylyi ADP1
Q0VQF9   309 VALALSVLNEML 320  Alcanivorax borkumensis SK2
Q3JCX7   318 TAENTGRLNEML 329  Nitrosococcus oceani ATCC 19707
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap