Conserved Protein Domain Family
SNAPC3

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pfam12251: SNAPC3 
snRNA-activating protein complex (SNAPc), subunit 3
This entry represents the C-terminal part of the SNAPC3 protein found in eukaryotes. This protein is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.
Statistics
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PSSM-Id: 463506
Aligned: 63 rows
Threshold Bit Score: 172.785
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ERN19067     202 HEYLVLGRQRVTELRDKIHCFMD---------E-----LmckEELHDPSGYFLIEDVFCKDMRDPS-----AIDYSEPIF 262
XP_003722863 221 EVWAVLSCQPLVALLDAIDCPTAr-----------------dPLTTSRNAFFFIHGVFYIDDRHRSht--dFVDLSEVIR 281
Q38E05       235 ETWAVLSCQSLGTLLDTFVCRNCi------------------PVNISKNAFFFIGGTFYVDNRHAGeggedYEDLTAPIR 296 Trypanosoma brucei
XP_006682613 184 ASVKILGGQTLADLRDVLLCSSD---------Lil--iGneaQNTQTRPGYFFIENTFYVDLRD-N-----AVDCSRVIR 246
XP_002141266 212 AEFDVLEYQTLAEIRDAFNCDDS---------Kr----EeelLKVKTKGACFFIDGVLYPDLRETEd---gIINYATYLK 275
EAZ51565     249 SEFDILETQTLSELSNSFICHDS---------Kq----EeelLGFHPTGDCFEINGDLY--LNGTDd---iKSNFINTLS 310
EDO08621     305 REFDMLSSQTLAELRDAFRCASE---------I-----RplnVDLKANGSCFMLNGQLFPDLRND------ACDYSEPLL 364
XP_001615778 405 AEYEILSSQTLADLTDVFFCFDSsn----------------yGLPQFEGSVYYIDGVLYPDLRSPS-----ALDYSACIL 463
Q8IKM4       440 AEYEILSNQTLANLTDVFFCFDTsn----------------yGLPKCDGSLYFIDGILYPDLRSNN-----AVDYSTSIL 498 Plasmodium falc...
XP_029347890 159 NTIQFYDTQTLQDLKQVFKCKNEeseisgdvsNnihkpLefiENSDLKHGSFYINNNIYVDSSLV------SMEYTETMK 232 pea aphid
ERN19067     263 D--WMRNNkddalqkwssilskglkkfkaflpdstlATSLPSFK--------AVDMHNTLFCDLKFRLGAGYLYCHQGDC 332
XP_003722863 282 RndPLQDV-----------------------------SSFHALEhqgfarcpVKSAAETTFKDLNIKMGESCLLRHCGGC 332
Q38E05       297 HfdPCGEGa--------------------------sTEGETRQKniafgncpVKYVSQTTFGDLNLRLGEYGVMRHLGWC 350 Trypanosoma brucei
XP_006682613 247 S--WMELDk--------------------------eSFGNTEIK--------AARMDETKLWQLSIELNQAYLYMHQGSC 290
XP_002141266 276 G--YCNTVniig------------------------------------nkeeIIPMHKRKLNEISIPINLPCSFLHSGDC 317
EAZ51565     311 G--FTMKSnp-----------------------------------------qIFDMKNTQISHLNIPINSHSTYIHSGDC 347
EDO08621     365 H--FLYNYk---------------------------PGILRTSE--------CIEQTDAVLSHLELPIYMPGFLLHHGDC 407
XP_001615778 464 E--FYKKKkesnfir----------------------------------ppykvlqHKAVIGQMEIPLYQRCCFLHQGNC 507
Q8IKM4       499 N--FYKMKkmktnfik---------------------------------ypykinqDKAILSQIEIPLFKKCCFLHQGTC 543 Plasmodium falc...
XP_029347890 233 K--WACDHght--------------------------------------idnILSI-DTQLLDLEVCIGQPYVYQHLGRC 271 pea aphid
ERN19067     333 KHTMVIRdmr--lfhPEDVQNKAAYPLLVFEHQTFDHKCSICGIFRAVKVTYD-DKWAPTNPSYFCENCYYLLHYSKDGS 409
XP_003722863 333 DHYFFLSharslsgyPRK--ERHEFPHRVAKVRDQARRCLLCRLFPATVALYE-DPLSPESPAFYCAVCFDLLHSSDTPE 409
Q38E05       351 NHYFYLSsvtslrgfDRDDHTRAAYPQRVMKTPTRVVRCRLCRSHPATVVCYN-DEISPESPCPYCVPCFELLHATDEGE 429 Trypanosoma brucei
XP_006682613 291 GHLMTFDqigl-fnpNVDSKYRKDYPISTPITNICMPKCHVCGVFYAKYATVD-DLHTAETPSIWCLDCFNQFHLNPSGQ 368
XP_002141266 318 EHRFTFTnirv-yqeCIDCPYEDVYPLQIYSPSTILTFCEICGINLANKLIFN-ALNLPKNPSYLCDSCTFAFLYDKETK 395
EAZ51565     348 EHRVTFTnirl-fnsKYDSPYKDSYPIQIYSHSRTLTFCEICGINQVTKVIFN-SLNLPRNPSQLCDSCTFIFLYDKNTK 425
EDO08621     408 EHRLMITairi-fdrTRDCPYEECYPLKVFMPRQRAKQCNVCEYNEPSTTVFN-SLVLPHIPSHLCNYCYTRLKLLESSG 485
XP_001615778 508 EHRIIFNnirq-ynsLRD-GESSKYPLRTFKPNIAKKLCLCCRKNMAQRIVLD-CYLFKENPSYVCNCCFDLFLLDRQGH 584
Q8IKM4       544 EHRIVFNnirq-ynkLRD-KHLSKYPLRTFKPNISNKYCISCHKNIAQKIVLD-SYLLKENPSYMCNNCFDLFLMDKNNQ 620 Plasmodium falc...
XP_029347890 272 EHLFIFNein--iakFNDWLIQSKYPRVVSVEKEKLQKCIFCRKTVATIVMLSeNDRTLQTVNHMCKHCFESYNYDDFey 349 pea aphid
ERN19067     410 LLy-----NDFTVYDCS 421
XP_003722863 410 EA------AQYQRREAK 420
Q38E05       430 VEe-----GKFFAIRLP 441 Trypanosoma brucei
XP_006682613 369 --------PRYNVQLRE 377
XP_002141266 396 --------NPLENFIIC 404
EAZ51565     426 --------QSIEKCIIR 434
EDO08621     486 GVyrsdglASSVAIEYC 502
XP_001615778 585 PVd-----ALMKHFAYI 596
Q8IKM4       621 PId-----TSMKYFDYI 632 Plasmodium falciparum 3D7
XP_029347890 350 vrtekgvrsgdrvtqsl 366 pea aphid
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