Conserved Protein Domain Family
VCBS

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pfam13517: VCBS 
Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).
Statistics
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PSSM-Id: 404411
View PSSM: pfam13517
Aligned: 711 rows
Threshold Bit Score: 27.9685
Threshold Setting Gi: 75542721
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Phep_2985                       181 DFDGDGKTDVFC--------K-DA----VRWKYSS----G--GTTAw--iNLKA----NTETIdQ--VRFGDFDGDGKTD 233  Pedobacter heparinus DSM 2366...
EDO06453                            203 DLDGDCRPDLVLlve--renK-HY----LQIWQSYse-sNklKYVSkreaDIEL----PENHG-Q--VSFVDINADGTID 267  Babesia bovis...
Q4UAP4                              259 DMNGDCRPDLVLmleyphlkN-VY----VDIWLADvaptGvvYKRSd--nLLLP----KNHGM----ITFGDFDNDGTND 323  Theileria annulata...
XP_001732768                        217 DMNGDCLADLFLvcq--garA-GQ----LTYQIWTa--rAd-TPMa---yDLARtgdlPPGAG-A--LSFADMNRDGTMD 280  Malassezia globosa CBS 7966...
Q23AR5                              268 DFNGDCRADLVIq------tQ-QG----IEFWAKDd--nKnfCLVAi--qQMKRa---GASIV-S--FTFADVNFDGSID 326  Tetrahymena thermophila SB210...
Q54DA0                              247 DLNGDCLADLFItsk---slD-DDdsiiGEIWINNk--dLgySLVTt--lNFPP----GTG---Q--ITFADFDNDGDLD 309  Dictyostelium discoideum AX4...
WGS:AAXU:1101174000287_ALPR1_17413  251 DLENDGIPDFILcn----ygN-HG----GNISLFMd---GdfT--Tn--pQILG----GAGAR-K--VEVVDLNQDGKLD 307  Algoriphagus machipongonensis...
XP_001878166                        232 DLDGDCLADVFLvcnd-ekgG-QS----YQIWVNNk--dNgfSLSQa--gLLPP----GTQ---A--ISFADINRDGTID 292  Laccaria bicolor S238N-H82...
WP_015480792                        810 DLNNDGFVELILa------gDwMP----ITVWSINk--eGnlENKTk--eFGLE----NTNGM-WnvIDLKDLNNDGNLD 870  Polaribacter sp. MED152...
WP_015814180                        853 DLNGDKKADLILv------gE-WM----PVTVLINn--nGklENQTt--tYFDK----PYNGW-WnkILVEDLNGDGKDD 912  Dyadobacter fermentans...
jgi:Phep_2985                       234 VFT 236  Pedobacter heparinus DSM 2366
EDO06453                            268 IAV 270  Babesia bovis
Q4UAP4                              324 ILV 326  Theileria annulata
XP_001732768                        281 VVF 283  Malassezia globosa CBS 7966
Q23AR5                              327 MVA 329  Tetrahymena thermophila SB210
Q54DA0                              310 MIY 312  Dictyostelium discoideum AX4
WGS:AAXU:1101174000287_ALPR1_17413  308 ILA 310  Algoriphagus machipongonensis
XP_001878166                        293 MVF 295  Laccaria bicolor S238N-H82
WP_015480792                        871 ILA 873  Polaribacter sp. MED152
WP_015814180                        913 LVI 915  Dyadobacter fermentans
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