Conserved Protein Domain Family
CCDC66

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pfam15236: CCDC66 
Coiled-coil domain-containing protein 66
This protein family, named Coiled-coil domain-containing protein 66 (CCDC) refers to a protein domain found in eukaryotes, and is approximately 160 amino acids in length. CCDC66 protein is detected mainly in the inner segments of photoreceptors in many vertebrates including mice and humans. It has been found in dogs, that a mutation in the CCDC66 gene causes generalized progressive retinal atrophy (gPRA). This shows that the protein encoded for by this gene is vital for healthy vision and guards against photoreceptor cell degeneration. The structure of CCDC66 proteins includes a heptad repeat pattern which contains at least one coiled-coil domain. There are at least two or more alpha-helices which form a cable-like structure.
Statistics
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PSSM-Id: 434558
Aligned: 12 rows
Threshold Bit Score: 117.974
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
KMZ00840             445 HDLKD-SEDDVQSMQSSS-----------TYLRGQNAPLDAHTLAERMDKRRKAAEYHNAIKKQLHERELIRKWEQERHR 512 
XP_414339            394 AALGNfMPSKVGNAEKGAkssaldhsqktSFLRSMTALLDPAQIEERDRRRQKQLEHQKAIMAQVEEKRKKKQLEEEKRK 473 
XP_008103460         452 TTSCHsTPTEIEVSGKTSrsnisessqkaSFLRSMTALLDPAQIEERERRRQKQLEHQKAIMAQVEEKRKQKQLEVEQRK 531 
XP_006005814         498 STLAPfSPSGTESLGRASvvtnlgqsqknSFLRTMTALLDPAEIDEREKRRQKQFEHQKAIAIQVEERRRQKQLEEERRQ 577 
EFX72153             269 PPRWVaRPTNATFVQTEPlms-----ggpSFLRGQNVVVDVAELAERERKRAKANELQRVLLQQLAEKENQKLLEKKRQQ 343 
EGI68942             236 SQVLViNHDSASSPDSSTtgstgsdinkvSYLRGQNIPMDAEILQEREMKRQKALELQNAIKQQLEEKDRQRKEEKERRL 315 
XP_002048096         446 HDLKD-SEDDVQSVQSSS-----------TYLRGQNAPLDAHTLAERMDKRRKAAEYHNAIKKQLHERELIRKWELERHR 513 
WGS:AAQB:GK12267-PB  376 KD----SEDDIQSLQSSS-----------TYLRGQNAPLDAHTLQERIDKRRRAAEYHNAIKKQLHERELIRKWELERHR 440 
XP_001985289         460 HDLKD-SEDDVQSMQSSS-----------TYLRGQNAPLDAHTLAERMDKRRKASEYHNAIKKQLHERELIRKWELERQR 527 
XP_016279203         505 PLSGGqLGSAEENLGKSTqdvattnvektSFLRSMTALLDPAQIEERDRRRQKQIEHQKAITAQVEEKRRKKQLEEQQRK 584 
F1PZQ5               411 TTGSQvEPSEEEHIAKPVrdmamansqktNFLRSMTALLDPAQIEERDRRRQKQLEHQKAITAQVEEKRRKKQLEEQQRK 490  dog
1_pfamImport           1 TDGSQvGPSEEEHTAKPVrevamtnhqktNFLRSMTALLDPAQIEERDRRRQKQLEHQSLSIEQVYNTKGLKCLNNSLEV 80  
KMZ00840             513 QEEQIEEERIRRQKQLEQERLEFERRTLLEREEAQQKKQQVMLDAIQKAEVAAKIEKQKRRMVHQPskvsqeteeddeae 592 
XP_414339            474 LEEQEEEQRLAREKERMQKQFEEDMLKQKQKEELVILKTNELYQTMQKAQELAQRLKQEQRIQDLA-------------- 539 
XP_008103460         532 QEDQEEEQRLAKEQELMKKQFEEDLLKQKQKEEIMALKTNVLYQTMQKAQELAQRLKQEQRIKELA-------------- 597 
XP_006005814         578 QEELEEELRLEQEREKIQKQFEEDVLKQKQKEELLTRKTNELYQSMQRAQEQALRLKQEHRMRELA-------------- 643 
EFX72153             344 EEEERQELELQRHLEAERRQIEEERRRVQEKKEAEERRLEAVKEAIAGAQQNALAEKL-ARRRNL--------------- 407 
EGI68942             316 REEMLEEERIRRERERDKARFEEEQRIIREKEEAKLRKTQAMREVLEAAERLAKEDGKNRRKRE---------------- 379 
XP_002048096         514 QEEQLEEERMRRQKQLEQERLEFERRQLQEREEAQKKKQQAMLDAIAQAEMAAKMEKQKKRKNRMP-------------- 579 
WGS:AAQB:GK12267-PB  441 QEEQMEEDRLRRQKQMEIERLEYERRQALEREEAQKKKQQVMLDAIAKAEVAAQKEKQKKRKNREE-------------- 506 
XP_001985289         528 QEEQLEDQRIRRENLMEQERLDYERRQLLEREEAARKKQQALLDAIAKAELAAKIEKQKKRQKHVPpieqspsqer-pel 606 
XP_016279203         585 QEEDEEERRLAREREEMQRRFEEDLLEQKRKEEMMALKTSELYQSMQRAQELAQRLRQEQRIRELE-------------- 650 
F1PZQ5               491 KEEQEEERRLAREREEMQKQYEEDILKQKQKEEIMTLKTNELFQTMQRAQELAQRLKQEQRIRELA-------------- 556  dog
1_pfamImport          81 LVKGEVVGRLAREREEMQKQYEEDILKQKQKEEIMTFKTSELLQTMQRAQELAQRLKQEQRIRELA-------------- 146 
KMZ00840             593 lmrvqsvEEEEDAEE 607 
XP_414339            540 -------QKGHDISK 547 
XP_008103460         598 -------EKGHDTSK 605 
XP_006005814         644 -------RKGHDISN 651 
EFX72153             408 -------QNRTAVVQ 415 
EGI68942             380 -------EHTDEDTD 387 
XP_002048096         580 -------SKEHRQSQ 587 
WGS:AAQB:GK12267-PB  507 -------VKVKTTTK 514 
XP_001985289         607 lrvlsveEEEEEQQQ 621 
XP_016279203         651 -------QKGHDISN 658 
F1PZQ5               557 -------QKGHDTSG 564  dog
1_pfamImport         147 -------EKGHDTSR 154 
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