Conserved Protein Domain Family
RBM39linker

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pfam15519: RBM39linker 
linker between RRM2 and RRM3 domains in RBM39 protein
A conserved linker between the second and the third RRM domain in human RBM39 (CAPER) protein, also present in other RNA binding proteins, especially those involved in RNA splicing. This linker was implicated in interactions with ESR1 and ESR2. Preliminary results from JCSG suggest that this is a structured domain with a well defined fold.
Statistics
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PSSM-Id: 464757
Aligned: 86 rows
Threshold Bit Score: 69.9942
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_003558785 369 LDDDE-GGGLALNASSRALLMQKLDRSGVttsltsgmgaaglntsvtlPavsvlgAPPAAPALQPTLTGlglipgasVPV 447
EFN77277     200 TDELD-RSGIDLGATGRLQLMFKLAEGTGle----------------iPp-----AAANALNMAPVMT---------APQ 248
EFA04195     354 SDELD-RSGIDLGATGRLQLMFKLAEGAGmq----------------vPq-----AAANALSIATGQPV--------VPQ 403
XP_001992854 458 TDEMD-RSGIDLGATGRLQLMFKLAEGAGla----------------vPq-----AAANALLATAPQP---------APM 506
ETN62863     395 TDEMD-RSGIELGATGRLQLMFKLAEGAGla----------------vPr-----AAADALLATAPQP---------IPQ 443
XP_002428613 356 TDELD-RSGIDLGATGRLQLMYKLAEGTGmq----------------iPp-----AAATALNLANALPQ----------- 402
XP_004929274 348 ADELD-RAGIDLGATGRLQLMFKLAEGTGlq----------------iPp-----AAASVLMGSGSA----------LVS 395
NP_001135965 328 VDELD-RAGYDLGATGRLQLMYKLAEGTGfp----------------iPq-----AAANALQVASGVQAa-------PAA 378
XP_009012913 467 KPTHStSTGFNLGPTERLQLMAKLAEGTGmq----------------lPa-----AATTAISASNQ-------------- 511
XP_014288665 368 TDELD-RSGIDLGATGRLQLMFKLAEGTGmq----------------iPa-----AAASALNVAVPG----------SMT 415 brown marmorate...
XP_003558785 448 ISQ-PIATAPPSECLLLKNMFDPAVETDPDF 477
EFN77277     249 PPP-QAAPPIATQCFMLSNMFDPQNETNPNW 278
EFA04195     404 VQT-NSTPPIATQCFMLSNMFDPATESTQTW 433
XP_001992854 507 QHE-QQTPSIATQCFILSNMFDPRTETNPTW 536
ETN62863     444 QPL-QQSPPIATQCFLLSNMFDPSTETNPNW 473
XP_002428613 403 -AV-QPAPPIATQCFMLANMFDPATETNPTW 431
XP_004929274 396 PQP-QVAPPIATQCFMLNNMFDPATETNPSW 425
NP_001135965 379 PTV-QVTPPIATQCFLLANMFDPNKEDVDSN 408
XP_009012913 512 ----AVTPPIATQCFMLSNMFDLKKQNAANW 538
XP_014288665 416 SMAsNIAPPIATQCFMLSNMFDPTTETNPNW 446 brown marmorated stink bug
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