2LR4


Conserved Protein Domain Family
DUF4879

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pfam16219: DUF4879 
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Domain of unknown function (DUF4879)
family of short proteins of bacterial proteins of phage origin, exemplified by protein SPBc2p013 from Bacillus phage SPBc2, found in various Bacillus and Pseudomonas species. Structure show unexpected structural similarity to greek key beta barrels from the E-set domain, especially to domains involved in carbohydrate and protein- protein binding. However functional consequences of this similarity are not confirmed.
Statistics
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PSSM-Id: 435226
Aligned: 6 rows
Threshold Bit Score: 139.961
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LR4_A            3 EALPLYYLQITGITSD---Gnd---fAWDNLTS-SQTKAPNVLKGNKLYVKARFMGYtkltvitGkDGKNLLYNG---TA 72  Bacillus sub...
WP_013700518      3 QAMPLQEVRVIGVCSEkskG------EWEEIKK-GQSMTRHSHGGSFLRIATVDIGY-------GhSGVEKMNSS---QL 65  Treponema su...
IEC:ABF-0017176  33 PAPALSSVQVYAVYSSlkgG-------WQAVPT--NTLSLSGYAGGTLRIAVLEVGY-------GgNRIGWLNGG---QT 93 
IEC:ABF-0015544  70 PAPALSRVTVYAVGSSn-cG-------WEYMTSiGQLSTTCDHGGAQLRVAVQEIGY-------GnNPVAWMNGGvlpRS 134
Q7MYD3           69 PAPPLTNMWVYAVGSTn-cG-------WEYTSN--LPVTNCNHGGQQLRAAVLEVGY-------GyNSFAWMNGGalpYS 131 Photorhabdus...
jgi:Hoch_1105    79 PAPGITYFQIVGICSSysgGcnpatyTWESIDA-YQTSTVFNHGGSIVGTAVLEYGY-------G-NGGANLGGV---SG 146
2LR4_A           73 KMFKSDai----------lgQNKVVIGWDKYFEipMDALQDNSIQIKALSSGTTFVYSQKID 124 Bacillus subtilis
WP_013700518     66 KQYDSSie----------tdSSGIAFAFIKYWN--ADGYNGGNFTYENDTLTGTYCTKSTRL 115 Treponema succinifaciens
IEC:ABF-0017176  94 SPYQVNpvcvvsgrytescpAGSIVSGWMAYFN--ADNMSSVTFRYQSTSTNFPNRTLSTSL 153
IEC:ABF-0015544 135 ANYQTDgicivgnqytfpcpAGYTVVGWMYYYN--LDGTDNGQFKFQDTSTNAPRNTLFTQT 194
Q7MYD3          132 L-YSSTpvcitngyynwpcaAGQIVVGFLKEYS--LDGYQNGIFSYQNTSANWPRNTMSTQI 190 Photorhabdus laumondii subsp. ...
jgi:Hoch_1105   147 SNYDIEylcgsms-nlhscsTGETVTGFLKFYS--FSGPQGGSLSANTSSIAYPFGFWSDSL 205
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