Conserved Protein Domain Family
Sm_like

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pfam16243: Sm_like 
Sm_like domain
This domain, approximately 150 residues, is mainly found in several uncharacterized proteins in various Prochlorococcus and Synechococcus species. The crystal structure of ECX21941 reveals unexpected similarity to Sm/LSm proteins, which are important RNA-binding proteins, despite no detectable sequence similarity. The specific function of this family is unknown, but the structure analysis of ECX21941 indicates nucleic acid-binding capabilities and suggests a role in RNA and/or DNA processing.
Statistics
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PSSM-Id: 374451
Aligned: 11 rows
Threshold Bit Score: 130.57
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_007001631                   14 IFKMTNGEEVLSRAVITVDQNESLIFLQDPVMVHVMTKPMSETKMVRGVGFVKWQQLSDEEFFVVKVKDVVCIATMSREV 93 
Q0QZ83                         14 IFKLNNGEEVVGKAVLTDDQGETLVFISNPVVIETYTRELDSGKISRGMGFSHWMQMSDEEFFILREKDIIALGTLQPEY 93  Synechococcus phage syn9...
AFD02732                       14 IFKLVNGEDVLGKSLITEDNGESIVFIQDPVTLEIFTKDLDDGKVARGMGFAKWMQMSDEEFFMQREKDIISLATMSKET 93 
REF_CAMERA-phage:SXCG_00171T0  14 IFKLLNGEEVLGKAVLTEDEGQTLVFIQDPVCTQIVTKETDDGKTIRGMGFAKWMQLSDEDFFILQEKDILTVTSMSKEI 93 
ADO99427                       14 IFKLVNGEEVLGKAILTQDETETLVFIQDPVCVQVVTRESEDGKVTRGMGFTKWMQLSEEDFYIIREKDIITVSSMSKEV 93 
Q58LI1                         19 VLKLVSGEEVLGKAVLTNEGNETLCFIQNPIAVQMVERELDGDRLARGIGFSKWMQLSDEDFYVIREKDILTISAMSKQC 98  Prochlorococcus phage P-SSM4...
YP_004324963                   14 VFKLVSGEEVLGKAVLTEDSGETLCFVQNPVSTVVINNKDDSGRNIRGVGFAKWMQFSDEDFYIIREKDVLTVSSMSKEI 93 
AOO10714                       14 VIKLTNGEEILAKAVLTEDEGETLIFVSSPVLIQNVMKELPDGKVLKAMGFARWMQMSDEDFFILREKDIITIASMSREV 93 
ADO97205                       14 IFKLVSGEEILAKAVLTDDNGETLCFISDPVMIQTITKEIDDTKVLRGMGFTKWMPMSDEEFYILREKDIMTIASMSSPV 93 
AXF41280                       14 IFKLVSGEEILAKAVMTEDRGESLIFMSDPVSVLPITKDVGEQKILRGMGFSKWIPMSDEEFFILREKDIMTMATMSRPV 93 
YP_004324740                   14 IFKLVSGEEILAKAVLTEDKGESLIFISDPVSVQAITKEIGNEKVVRGMGFTKWIPMSEEDFYILREKDIMTIATMSKPI 93 
YP_007001631                   94 QLLYE 98 
Q0QZ83                         94 VIMYE 98  Synechococcus phage syn9
AFD02732                       94 IFLYE 98 
REF_CAMERA-phage:SXCG_00171T0  94 SYLYE 98 
ADO99427                       94 IFMYE 98 
Q58LI1                         99 IFMYE 103 Prochlorococcus phage P-SSM4
YP_004324963                   94 SFMYE 98 
AOO10714                       94 MFMYE 98 
ADO97205                       94 VLMYE 98 
AXF41280                       94 KLMYD 98 
YP_004324740                   94 VLMYE 98 
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