Conserved Protein Domain Family
NCOA_u2

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pfam16665: NCOA_u2 
Unstructured region on nuclear receptor coactivator protein
NCOA_u2 is a region of natively unstructured but highly conserved sequence found on higher eukaryote nuclear receptor coactivator proteins. It lies between a PAS domain, pfam14598 and a steroid receptor coactivator domain, pfam08832. The function is not known.
Statistics
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PSSM-Id: 465223
Aligned: 20 rows
Threshold Bit Score: 87.8701
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_016852039  467 HAM-NLSSSPMNSPGVTPPQ---FMSPRHRvspglvHRPRVPSNPFSPTmpTTHSPVGMM-GGCGVASAvGN---RPYPG 538 
XP_015220294  461 YGL-GMNSPSQGSPGMNVPQqnlMVSPRTR------GSPKMVPSQFSPG--GMHSPMGPG-SAGGAGGG-GN---SNFSS 526 
XP_011475689  488 FGLsGMNSPS-GSPRIGGPQqgfLMSPRNR------GSPKMGANQFSPG--GMHSPMGSI-GSGGAGGG-GT---STFSS 553 
XP_019205506  485 FGLsGMNSPS-GSPRMGVPQqglLMSPRNR------GSPKMGSNQFSPG--GLHSPMSGI-GSNGGSGG-ST---TTFSS 550 
XP_012395279  468 HSL-SLNNSPMDSTGITLAQ---FMSPRRQvssglaTRPRMPSNSFSPNipSLSSPIGMVgS----ACGnPN---RTYSN 536 
XP_009807463  460 YAL-KMNSPSQSSPGMNPGQpnsMLSPRHRvspgvaGSPRIPPSQFSPAg-SLHSPVGV-----CSSTG-NS---HNYTN 528 
XP_007260174  466 YSL-KMNSPSQGSPG--------MLSPRHRaspgiaGSPRMPPPQFSPAn-ALHSPVPV---CNSSGNVgGA---HGYTS 529 
XP_015209118  469 YAL-KMNSPSQSSPGMTPGQqnsMLSPRHRvspgmaGSPRVPPTQFSPAg-SLHSPAGM------NSSTgNS---HSYSS 537 
2_pfamImport    1 YGM-GMTSPTQASPAMNAPPhnvLSSPRVR------GSPKMGASPFSPLs-GLNSPMSSS-HPGNAG---GG---STFSS 65  
XP_010793938  512 gggygMTSPPPASPGINGPPhnvMGSPRVR------GSPKMGAGPFSPG--GMNSPMSSS-HPGNSG---GGlgsTTFSS 579  black rockcod
XP_016852039  539 TPLNSMQGLREGPSPPVGYSTPSPVL--RQLSNQNspsrMSMPPMKTE---------PKDSKEMGS 593 
XP_015220294  527 SSLNALQAISEGVGNPMPSSLSSPAH--KPDSSPS----INSSQQQQQ-------------QQQQQ 573 
XP_011475689  554 SSLNALQAISEGVGSSLSSTLTSPPPahKPDSSPS----IHSSSSSSQpnqq-gkpsQDGCKSPTG 614 
XP_019205506  551 SSLNALQAISEGVGSSLPSTLTSPSPahKPDSSPS----IHSSSSSSQ---------------PSQ 597 
XP_012395279  537 IPATSLQGINEGPSNSIGFSATSPVL--RQLSSQNspsrMNMLPTKAE---------SKDSKEITS 591 
XP_009807463  529 SSLNALQALSEGHGVSLGSSLASPDL--KMGNLQNspvnMNPPQLSKMg--------SLDSKDCFg 584 
XP_007260174  530 SSLNALQALSECHNISLGPALGSPDR--KLASPANpa-gVNPHLLHKLg--------GSESyaehs 584 
XP_015209118  538 SSLNALHALSEAHGVTLGQSLASPDR--KLGNAQSspspANPHPLAKLg--------SSDFKESFg 593 
2_pfamImport   66 SSLNALQAISEGVGNPMPSPLTSPPPq-RPDSSPS----INSTNVPTgpck---lptYADSKSPGS 123 
XP_010793938  580 SSLNALQAISEGVGNPMPSPLTSPPPh-RPDSSPS----INSTNQAAGgpckpslpaYSDSKSPGS 640  black rockcod
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