6XZ6


Conserved Protein Domain Family
GARP

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pfam16731: GARP 
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Glutamic acid/alanine-rich protein of Trypanosoma
GARP, or glutamic acid/alanine-rich protein, is one of a subset of major surface molecules on Trypanosoma species. They are all surface-orientated, immunodominant, and highly charged. GARP is interesting as ts expression coincides with the loss and gain of variant surface glycoprotein (VSG) molecules in the tsetse vector. It has an extended helical bundle structure that is homologous to the core surface structure of VSG, suggesting that it might replace the bloodstream VSG as the trypanosomes differentiate inside the tsetse vector after a blood-meal.
Statistics
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PSSM-Id: 435545
Aligned: 15 rows
Threshold Bit Score: 116.708
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6XZ6_C  11 EQTKALCEVAKQLRKLPLLTEERRFEAVGALEESKKAAKEGKKAAKRAEaGAVGGtseqqqaAKRAREAATVAYEASVRA 90  Trypanosoma brucei br...
Q38CV1  39 KHIEVLCNLAEQLRGLPDTVSSAVISVTEASIKASKAKVQAEEAVELAE-SKGLN-------VTKAKEAAVRATLAAEAA 110 Trypanosoma brucei
Q38CW1  39 EDVLVLCRVAEQLRGLPDTVSSALVNAATASSKAFEAKVQAEEAVELAE-SKGLN-------VTKAKEAAVRATLAAEAA 110 Trypanosoma brucei
Q38CW0  39 EEIRASCEVAHQLRGLSQTVTSAVETSAAASSKAFEAKVQAEEAVELAE-SKGLN-------VTKAKEAAVRATLAAEAA 110 Trypanosoma brucei
Q38CV6  39 GHVRVVCNLAEQLRGLPDTVSSALVNAAAASSKAFEAKVQAEEAVELAE-SRGLN-------VTKAKEAAVRATLAAEAA 110 Trypanosoma brucei
Q38CU9  39 VYVTALCRVAEQLRGLGGTISSSLLTVTSASSKAFKAKVQAEKAVKLAE-SRGLN-------VTKAKEAAVRATLAAEAA 110 Trypanosoma brucei
Q38CV5  39 EDVLVLCHVAEQLRGLPDTVSSALVTAAAASSKAFEAKVQAEEAVELAE-SRGLN-------VTKAKEAAVRATLAAEAA 110 Trypanosoma brucei
Q38CV4  39 DDVLVLCYLAEQLRGLPDTISSALVNAAAASSKAFEAKVQAEEAVELAE-SKGLN-------VTKAKEAAVRATLAAEAA 110 Trypanosoma brucei
Q57U16  30 SHVSAACLFSEALHGIPFGVKALKALAAANVSDASKAREGCQDAVRRAE-DASWNnpkaeeaVGRARAALKEAESAENAA 108 Trypanosoma brucei
Q385U1  29 AQVLTLCQITEQLRGLKEVVMKIGPRAVEEALFTLKAKKRSEVSLRRAE-EAAERdrnagfaAERARLAYDSVCEAVEFA 107 Trypanosoma brucei
6XZ6_C  91 EAAAMEVKRFARALDSFESEYESVfSGLLRGAAEHGG-NETIKQLAKECaTAVADDVTPEALTRAAHNLRGL--YMQDFA 167 Trypanosoma brucei br...
Q38CV1 111 ATAASNVEINAANIAELPWSQRRR-DAGLQNIEHCKNlDKDVREAAVKC-TKKAENVTADSLRAALEGLETLf-SDVYIL 187 Trypanosoma brucei
Q38CW1 111 ATAASNVEINAANIAAVPWLERRQ-NVGWQKLAKCIDlDMDMREAARVC-RRAADNVTAQSLTAALKDLEKVy-TDVSTR 187 Trypanosoma brucei
Q38CW0 111 ATAASNVEINAANIAAVPWLERRQ-NTGWEVLTKCINlDDDIKKMASKC-KSAAEVVTAESISAALNDLGKTf-INEKTR 187 Trypanosoma brucei
Q38CV6 111 ATAASNVEINAANVTSSRLARRNP-NTGFEKIAMCENlDEDVREAAVKC-TKKAENVTTQSLNEALHRLENLy-TNMSAL 187 Trypanosoma brucei
Q38CU9 111 ATAVSYCITHSTKVGSIAEMLWEV-DEELHVFSLCGNkDRDVQDTALKC-TDTAEGVTAQSLSEALEGLAKLv-FDDNVA 187 Trypanosoma brucei
Q38CV5 111 ATAVSYANAHGTKVGSMTEILWEA-DEELRELVVCKRmDEETIKAAAEC-TGTAEVVTAQSLSEALEALANLhyGDENVA 188 Trypanosoma brucei
Q38CV4 111 ATAASNVEINAANISAFSIDFLESaNLLLFEVRDAKDvGEDVRIVAQRC-TGEANFVTVASLTNALDNVTSLysVYGKGT 189 Trypanosoma brucei
Q57U16 109 KTALSDVEQYAARAPLLAAGKTAPiDDYLKSVAEDNSaASTARRIARGC-SLPNRGVNSWVLTQAVESACAI--FMGEIC 185 Trypanosoma brucei
Q385U1 108 EYAATSIEGRASSLLVIQEYYVPFlEDVMLRVGTDAEaAE-AQEAAMSC-LQTKRSVSPTSLSEAALELRVR--LGVRNF 183 Trypanosoma brucei
6XZ6_C 168 EEYLQEANEAANKLEELQKATAETVRAADAADDAKS 203 Trypanosoma brucei brucei TREU927
Q38CV1 188 VTLRKEKVEMQEEMQSLEQNAATVLRVLQKAEDAAA 223 Trypanosoma brucei
Q38CW1 188 EALRKETVEFHKELASLEEHVEEAVRAQKRAEDAAA 223 Trypanosoma brucei
Q38CW0 188 EALRKESVEFHKELASLEEHVEEAVRAQKRAEDAAA 223 Trypanosoma brucei
Q38CV6 188 ESLRVEHVEIERFFEMLEEHVEEAVSAQRQAEDAAA 223 Trypanosoma brucei
Q38CU9 188 RKLRQEDTVFQREFMWLQQHMEEAVRAQKQAEDAAA 223 Trypanosoma brucei
Q38CV5 189 ETLRRKDVVFHKELKSLEGYVEEAVHAQKQAEDAAA 224 Trypanosoma brucei
Q38CV4 190 ASLSMESVALLEELKMLEDGLKKSQVAVSVAADAAD 225 Trypanosoma brucei
Q57U16 186 RIARTRMVDLRAEYDQLEAAVRRAGEARVAARAAES 221 Trypanosoma brucei
Q385U1 184 RALRRDLHRAAFCLYSLKKTAAKIALARSSVEEiey 219 Trypanosoma brucei
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