Conserved Protein Domain Family
CNDH2_C

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pfam16858: CNDH2_C 
Condensin II complex subunit CAP-H2 or CNDH2, C-term
CNDH2_C is the C-terminal domain of the H2 subunit of the condensin II complex, found in eukaryotes but not fungi. Eukaryotes carry at least two condensin complexes, I and II, each made up of five subunits. The functions of the two complexes are collaborative but non-overlapping. CI appears to be functional in G2 phase in the cytoplasm beginning the process of chromosomal lateral compaction while the CII are concentrated in the nucleus, possibly to counteract the activity of cohesion at this stage. In prophase, CII contributes to axial shortening of chromatids while CI continues to bring about lateral chromatid compaction, during which time the sister chromatids are joined centrally by cohesins. There appears to be just one condensin complex in fungi. CI and CII each contain SMC2 and SMC4 (structural maintenance of chromosomes) subunits, then CI has non-SMC CAP-D2 (CND1), CAP-G (CND3), and CAP-H (CND2). CII has, in addition to the two SMCs, CAP-D3, CAPG2 and CAP-H2. All four of the CAP-D and CAP-G subunits have degenerate HEAT repeats, whereas the CAP-H are kleisins or SMC-interacting proteins (ie they bind directly to the SMC subunits in the complex). The SMC molecules are each long with a small hinge-like knob at the free end of a longish strand, articulating with each other at the hinge. Each strand ends in a knob-like head that binds to one or other end of the CAP-H subunit. The HEAT-repeat containing D and G subunits bind side-by-side between the ends of the H subunit. Activity of the various parts of the complex seem to be triggered by extensive phosphorylations, eg, entry of the complex, in Sch.pombe, into the nucleus during mitosis is promoted by Cdk1 phosphorylation of SMC4/Cut3; and it has been shown that Cdk1 phosphorylates CAP-D3 at Thr1415 in He-La cells thus promoting early stage chromosomal condensation by CII.
Statistics
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PSSM-Id: 465283
Aligned: 21 rows
Threshold Bit Score: 249.239
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEC43358      319 WKLLDPHE---PDSVKSR--PLCIGKT-IR---------------LPAGvdeppsacvtgartRHVAPQRRLRGVidkav 377 
EDV29587      278 WQVLDPHD---KDAIPER--AFKASRN-WR---------------IPKNia-----------iDTQAIRKRKRGQisits 325 
CRZ22291      330 gadedepvmdlfrlqKCKhgPYRACKPtF----------------VPEQ--------------VEKRRLKKREKL----- 374 
EKC29624      248 WKMIDPHE---PGHTAER--NIKRGKT-FK---------------IPENvd----------drLSNKRKRKRQPE----- 291 
XP_004989642  308 WAKVDPHSqtdQITAAARsaPFTKLNS-YR---------------LPKS--------------ISTLAKAKAQKT----- 352 
3_pfamImport    2 WRCLNPF----ESS-EDK--PFKKGKRgYS---------------LPIDfivn------tgqyVNHAGNNLLRGT----- 48  
XP_002905868  287 WTPLDAYD---ASSSVAR--PFKKGRSyPR---------------VP-------------------AYKKKKRGS----- 322 
ERN03322      287 WKPLNPHE---PGTLKVK--PFKKGNF-VRarrvshteeysislqFP---------------------VAKLHGT----- 334 
EEF45573      299 WKPLNPHE---PGTLKVK--PFRKVKP-YRrnvvksarqtsittmFP---------------------LARMRGT----- 346 
CBI22967      903 WKPLNPHE---AGNLKVK--PFKKVKA-FRrhgvcstkhnilttqFP---------------------LAKMHGP----- 950  wine grape
EEC43358      378 gypsLATQTFRSLRKRNHDDTREEDAAPErpvlp--lgglAFGDe----------------------------------- 420 
EDV29587      326 nqpgISIIEFCSRAACTRQNQKLLKHAMN-----------VICEd----------------------------------- 359 
CRZ22291      375 --------KTFSTLNEFLQRHVYHSLPKGit--------hTLDDd----------------------------------- 403 
EKC29624      292 ------IKKLCPLTQFVCQTFTNVEKYPKnpl-----kvvSFPE------------------------------------ 324 
XP_004989642  353 ------QKQKLPSLSTFFQTVRQRQARRGasrssllavdpAFAA------------------------------------ 390 
3_pfamImport   49 --------HAAMCCYAEYYNGADVRKSKKrg--------pTFAD------------------------------------ 76  
XP_002905868  323 -----------VALSNKEGAVGMEDEAEQdgl-----sdpAFQDrffmnangpqwaswvwtetsrenplektckrnfckt 386 
ERN03322      335 ----ISp---------------------------------EFAEa----------------------------------- 342 
EEF45573      347 ----ISp---------------------------------ELTEi----------------------------------- 354 
CBI22967      951 ----ISp---------------------------------ELTEi----------------------------------- 958  wine grape
EEC43358      421 ------FAYIAKANAKRKAAER----------------REKRKLALLRQK---DEGHVDRYDDD-------DEGGFAFGV 468 
EDV29587      360 ------LEYISYEFAENQHILSre-------------iNKLFKFMTSNGQdsdDHDKHDDQENN-------IDGGYDDDY 413 
CRZ22291      404 ------FSIIFGKLIRNLERHRmna-----------ikERALQHSGLQQQsgdIQSDEDELEVD-------EYEAINSGY 459 
EKC29624      325 ------LDKPFWTEYKRRQALSr--------------kESKVKMAYVEEEfteEQEEQEDFHED-------SGNDAADIL 377 
XP_004989642  391 ------VEHIVHKEDRKRATVAaqr-----------rkQQKLEQEKALQEvwrQQHEQSEAQADawqgfthSDNDNDDAF 453 
3_pfamImport   77 ------MEVLYWNQVKERLAAQkklqrklvrkqwwggyLKKQKNWPLKPAtlhGSPGVLGAAND-------DYNPEDIVQ 143 
XP_002905868  387 pllvktCDMLWQREAKWRSMMRrce-----------arEKQSAQAMLLREqamEEEEVDGQ----------DQMQALTLS 445 
ERN03322      343 ------LEALTNALKNTPASHSpp-------------pFEKLRQTLVSASngnCGIHGDPVNEN-------EDFKFENGF 396 
EEF45573      355 ------WEARFSRSEKTESADSpp-------------lYEKLRQSLSNGGynnSDTFGNAENDD-------EGNEHDSGV 408 
CBI22967      959 ------WEK-HRACERQQEPQTpp-------------lYEKLRNSLIHGDsqtFSAYSNVEDNK-------EDGGYDSGV 1011 wine grape
EEC43358      469 DDDds---dhDDHGDFQsnggvegntgMSSMDDLYRSHE----------------------------------LESQTFE 511 
EDV29587      414 SDQ-------DDFGIENnynpdqeivnNEHNMSIDPIAIeeqn---------------------------lenQIPQTYE 459 
CRZ22291      460 SDDei----eGASGVTGdgnltfadipNDDLEDRVHVSSmymnfdd--------------------pdlllkpAEQMTYQ 515 
EKC29624      378 LPQmnedrlfDAINSAVddapfsamtgSSEHNGFSASFNk--------------------------------gIIINDYE 425 
XP_004989642  454 ADDfggndddDDFGDGDfntvahadfgPSEEFDVAESDGnar----------------------------gdvEVTTTYE 505 
3_pfamImport  144 PEV--------------------------------APVLemqala----------------------amgkafTDRLSYE 169 
XP_002905868  446 TATarldmavDNSGGPL------------------------------------------------------------TYE 465 
ERN03322      397 DDF------------------------EDADIDLPNDNYkeneaplqpeqe----------svggdafvdkdlNARASLE 442 
EEF45573      409 PDF------------------------GQPDDDIPENMYmdedlhhekvgsst-------hfdineafgnedpSSQASLE 457 
CBI22967     1012 NDF---------------------------GDEMPHDMYmdddlplhqeqvrlpvlmcqeqnimhhddgaacfDSIDNLE 1064 wine grape
EEC43358      512 ELCRAHLKAFANGAEKYASETQLSKRVNIWQEKLAPVLEAEAQRPVFDIHEYGRNVIDSLEAVirrk------------- 578 
EDV29587      460 ELVKEHLNVYAKVTRQYIEDSALRSRVNEWQDRIKPALENEEKHPPFDIHTYGQSVLDSLKEKn---------------- 523 
CRZ22291      516 DLLKVHLQKYWSSAEETT--SKLCKRVQQWEEKIQLLLEKEETRREFNIHQYGTELLEQYEDI----------------- 576 
EKC29624      426 DLVKQHVEQYMASAQEYVKMTELSRRVSEWEERVLPKLEEEDTHDPFDINKYGSLLIGSLKK------------------ 487 
XP_004989642  506 QLVRLHVARFVAESQKYVQETELSRRVQEWEDRIRPVLEEESKHRPFDIHEYGSEVLESFPTKgk--------------- 570 
3_pfamImport  170 DLVRRNVERFIANSQKYARETELSLRVRDWEDKIGPQLQDQEERGAFDIHDYGDRIVAAFDy------------------ 231 
XP_002905868  466 EICRQHLATFMSGTEKYVRETDLSKKVSDWQDKLSPLLKQQDTRPPFDIHLYGREIIGRLEEEqknsslarhskttqrdk 545 
ERN03322      443 DLCRAHLDALLASIAESEKQTELAARVSTWKQKIEHNLEEQDSHPPFDIHAYGERLIEKLSLDpk--------------- 507 
EEF45573      458 DLCRSHLDALLANIAETEKQTELATRVSSWKQKIEHNLEEQDSRPSFDIHAYGERILDKLSLEan--------------- 522 
CBI22967     1065 DLCRSHLDALLANIAETEKQTELAARVSTWKQKIEHDLEEQDLRPPFDIHDYGDRILEKLSHKae--------------- 1129 wine grape
EEC43358      579 ---------ktsGEKTSFARVVDfasvarN--------------RPQYEVCRLFLASLSLSNSGNILpVQSDDD------ 629 
EDV29587      524 ------------DDAVSFEDVVSqkvltrNtyvalyeyysfyfrQEPYEICRLFAATLQLANNGNIE-ISHGGKne---- 586 
CRZ22291      577 ------------GQTKTFTELMEh-------------------vSTRYDISRYYLASLMLANTGNIE-MDFGCEse---y 621 
EKC29624      488 ------------ESNTAFKEVVK------A--------------KKTYEISRIFLASLMLANTGNVE-IVSKGDl----- 529 
XP_004989642  571 ----------lrNAPRMFSEVVC------A--------------KDPYEVARKFLATLQLANAGNVA-IESTDMed---- 615 
3_pfamImport  232 -----------iGERRSFVSLTK------Q--------------KPAYEVCRYMLAALQLANDCTVE-VSRDPRl----- 274 
XP_002905868  546 nkrirlatddeeSETVPFETLVD------G--------------KSQFEVCRLFLASLQLANSGNVAlFHARTAa----- 600 
ERN03322      508 -----------rNSGLPFTDIVG------G--------------QEKHEVARSFSALLQLVNNGNVV-LDKVSSngaafc 555 
EEF45573      523 -----------gENVMSFADVVK------G--------------QEKHDVARTFSALLQLVNNGDVN-LERSGVggmsvc 570 
CBI22967     1130 -----------nGNVMSFSEVVS------G--------------QEKHDVARSFSALLQLVNNEDVN-LDRGGTdgesvc 1177 wine grape
EEC43358      630 -NSGNHFKLQLLNT 642 
EDV29587      587 kAPVNTMTVKMLST 600 
CRZ22291      622 mKKGKGLALKLLKN 635 
EKC29624      530 eVGMDRFELHLLST 543 
XP_004989642  616 aAISGDIPLKLLTT 629 
3_pfamImport  275 hEGVDTMELKLLSR 288 
XP_002905868  601 eHGQVPFKMELLST 614 
ERN03322      556 fSAANPFYVRLLSS 569 
EEF45573      571 yTAMNPFHIQLLNH 584 
CBI22967     1178 yTDANPFYIKLLNR 1191 wine grape
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