Conserved Protein Domain Family
5TM-5TMR_LYT

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pfam07694: 5TM-5TMR_LYT 
5TMR of 5TMR-LYT
This entry represents the transmembrane region of the 5TM-LYT (5TM Receptors of the LytS-YhcK type).
Statistics
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PSSM-Id: 311566
View PSSM: pfam07694
Aligned: 71 rows
Threshold Bit Score: 67.238
Threshold Setting Gi: 501006942
Created: 22-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45477110   26 KTFRRL-L-HKQD-GYVD-KLKLICIFSVFTIVSNYTGIEIAgntimnenwlqgvssSS--TIANTRIMGVGISGLLGGP 99
gi 123591479   6 ALIYGS-VqRLGLsRRLR-HVLLGLAFGFGASVQMMQSIAVa---------------PG--VIVDSRALFIGFAGAFLGP 66
gi 81552186   22 YLLSLTyKsAADLaDSRL-QVPRFLLVSLMCVPLMFFPAQVa---------------PG--VFVDLRAVPIAFLTLRLGW 83
gi 81551457   17 YLLSLTyKsAEDItATAI-HVPRLLLLAVMAVVLMLYPAEVa---------------PG--VIIDMRAVPIAYLALRKGV 78
gi 147742898  17 YLFHRLqYsENKR-MIFS-KEYVTVLMTFVSLLLAAYPIPFQ----------------Ne-YLVHLTFVPLLFLGRYTNM 77
gi 501338435  20 YLLGKLsPhPITVdSKRSvRILYGLSLSILSLLLMQLTIEPv---------------SG--VLVDLRHIPVIVAAYFAGP 82
gi 501338624  22 YIISKIiHsTRFSsYAVK-SLIIGLATGLLGVVLMFKGIQV-----------------NdsLRMDLRHLPLVLLAFYGNR 83
gi 501337474  22 FLPFRNhPrITPKtNLNV-RLVLGGIAGLISVLLMLNSIQId------------------vARIDLRIVPVVIAMMFGGL 82
gi 501006942  21 HLLRNKrIfEDM--SLKS-KFLWGLYSGILGVILMINSVHI-----------------TpdAFIDFRYIPILFSAIYSGF 80
gi 499848976  16 TSIGSLtYtGREDyHTLR-RALRYLISVLAGIILVLYGVPLm---------------EG--VRVDFRGVPILLAGLFGGP 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45477110  100 IVGIGVGSIAGIHRYMLGG--TTALSCAISSILAGVITGYIGYIFKKYN----RTITPKFSAVLSVFIVSLEMIMILLIV 173
gi 123591479  67 LGATVALMVSLLLRISLVS--TAMPALAAGSMAASALMGSLWPVLRRRLglghFTGLVLLAVMISLP-----LVLLAWLP 139
gi 81552186   84 GWGLVGAVPLLVYRYLLGG--VGWPPAMVSAIGVVLVAGLFHGRLGLFRpqwpWERLLLPLLLIFLPNG--------LLL 153
gi 81551457   79 WAGLLALIPLLLYRFHLGG--VGTWSAVFSAVGVVLLGGLLHRSVDLSAprldWRSLWWRLLLVFMPNG--------ILI 148
gi 147742898  78 IYTLTAAFIVSLVDVFIFG---NSIIYGITLIVIAGIVSAVGPFLKQN-----DIISLLILNLISII-----ILLFLALL 144
gi 501338435  83 LPTCIVTAVIIVYRF-SVNtnAAAFAACLFILLVASGTSLIVRWLPLYSrktfTVVTVYATVLHGLVLT--------FVL 153
gi 501338624  84 FPLVVATLIIAGSRF-LFGvtPQAFIAFVSIIAISTGMIWIHRQLLNRPfrqnLALNVWALLMITFA----------VLI 152
gi 501337474  83 PSALVTGAMIIVTRFILTP--VEQMDAAVVSTIVIGVLILTIAVVRRYIrltfWNFELMIGIGIVYSLPGIY-----LLT 155
gi 501006942  81 FSSIIASILIAIFRSLILGvsDISLIGSAIALAMGIGFGIISLLKISKKrkyiYSMIFFVIASV-------------ISS 147
gi 499848976  78 LPALAVALPIMAYRLWAGG--TGAHAGVLSILLVALCAGMLHARFAQNRltwrDAWVPFAIFALANL----------SIL 145
                        170       180       190
                 ....*....|....*....|....*....|....
gi 45477110  174 ---EDGISIVKTIAIPMILVNSFGSFILLSMIQA 204
gi 123591479 140 vgrTDSLEVLAAIL---VLLNLTGALVFGTFLQR 170
gi 81552186  154 piiRHDLSLYLTVWLPLLVMCFLGALITLGILRS 187
gi 81551457  149 pvlRGDPAALLTVYLPLLVVTYAGFLVSLGIQRN 182
gi 147742898 145 spiYELVEI--LVLIPISFIITIASAITFVDIWh 176
gi 501338435 154 fdtGLILDILSVVL----PASFASSWLALVIIRD 183
gi 501338624 153 nlgFNDASL--RLLLATWTIGLAVGVLSSMLTLD 184
gi 501337474 156 nswTTFIEI----SLAYIFFNLIAGFVTYHLLTE 185
gi 501006942 148 ftvPQNVKFVFQAVSLYFSGYLIVSYISIKYADY 181
gi 499848976 146 lvpSAGPQLLRTAWLPVTLLQGLATLVAFTVVSL 179
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