Conserved Protein Domain Family
BRF1

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pfam07741: BRF1 
Brf1-like TBP-binding domain
This region covers both the Brf homology II and III regions. This region is involved in binding TATA binding protein.
Statistics
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PSSM-Id: 336794
View PSSM: pfam07741
Aligned: 161 rows
Threshold Bit Score: 49.8576
Threshold Setting Gi: 124450497
Created: 27-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122230192  400 SDISDDev-nGYINNEEETHYKTITWT--EMNKD-----YLE---E-QA-------------------AKEAALKAASEA 448
gi 74684781   553 DDLDDDeleaVFVLDEDAKQARARMWL--SSNGK-----WLEeekE-KQ-------------------EKRAALQRARGN 605
gi 754349573  434 tvIEDDei-aAAVLSRDEIIVKSKLWH--HANRD-----YLL---K-QK-------------------QKQLEIADNLAR 482
gi 641669267  385 vvIDEDei-dSYILSKESHQIKRNMWM--KMHGT-----AFR---K-MQ-------------------LSREERAKNPKV 433
gi 855305568  471 anaiDPev-eDMFLSEEEQKKKRELWL--ASNGD-----WLK---R-QE-------------------EKRREREQSGKK 519
gi 930406587  529 DDLDDDeldkYWVMSEDERQTRARMWL--SHNGK-----WLEedkE-RQ-------------------ERKAEYNRQHGI 581
gi 313237620  448 EGIDDDei-sCMILNEAEVSRKTTMWEnrKENKE-----WVK---R-QE-------------------EKRLEEASNPPK 498
gi 358254676  480 EGIDDEeldqEYILHPREVMIKAAIWY--KANAE-----YLQnarRkHL-------------------EKLRRAEEDAKN 533
gi 1084290155 517 EDIDDEeldrEYLLQPREIMLKAAIWF--KANAE-----HLElsrKrKL-------------------AKLQKQQQEQHE 570
gi 209877443  491 SDISDSei-nDLLLDDDEKEAKSILWD--EITREslpysWLRkinN-QDtniedinispvidnqkvphKKRKCEYKNQDI 566
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122230192  449 lkasnsncpedarkafeaakadaaKSRKEK---QQKKAEEAKNaappATAVEAVRRTLDKKrls-------svINYDVLE 518
gi 74684781   606 ------------------------DPSKNK---PKRKRTAPHKgp-yKSSDQAVQSVIKSKqfs-------grVNYDVLR 650
gi 754349573  483 ------------------------GVAIKAdpvKRKKKREPRTteptESHDLTLRPAAVPKkss-------nkINYDVLR 531
gi 641669267  434 ------------------------IRAKEK---KAKNALRtp----aKTAAEAVERVLKKKkls-------skINYDILD 475
gi 855305568  520 ------------------------VTKRKK---RTPNRAQYRHp--vKTAAEGLKRLIDTKkvs-------rnVNYEAMR 563
gi 930406587  582 dp--------------------nkPPPKKK---KRKSNAEKQKgp-yVSTHAAMEAFATQKkfs-------trINQEVLK 630
gi 313237620  499 ------------------------AKRARK---RRGKSTLPEY----STAGEALQTVIKQKrfs-------tnINYDVLN 540
gi 358254676  534 --------------------------PPKK---RARRTGSQRQprpm--nryGSREKFEVVseesedkpfsrkINYEALE 582
gi 1084290155 571 dt---------------------kGGPKKR---RTVNRNNY------TTSMKINRNAFSRTedpkp---isrkINYEALE 617
gi 209877443  567 td---------------------tNNNKDQ---KP------------ETAVESILMALDKNnkgt-----nkyLNSDTLA 605

                  ....
gi 122230192  519 SLFD 522
gi 74684781   651 GLGL 654
gi 754349573  532 GLgl 535
gi 641669267  476 NLDS 479
gi 855305568  564 SLFS 567
gi 930406587  631 RISQ 634
gi 313237620  541 TLKE 544
gi 358254676  583 ALVG 586
gi 1084290155 618 AVVG 621
gi 209877443  606 KLFT 609
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