Conserved Protein Domain Family
SSV1_ORF_D-335

?
pfam07935: SSV1_ORF_D-335 
ORF D-335-like protein
The sequences featured in this family are similar to a probable integrase expressed by the SSV1 virus of the archaebacterium Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination.
Statistics
?
PSSM-Id: 311750
View PSSM: pfam07935
Aligned: 10 rows
Threshold Bit Score: 75.6013
Threshold Setting Gi: 342306334
Created: 20-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 74542651    9 TNGDVIIRERKGKYYVYKLET-INGEVKETYVGPLADVVETYEKLKdsSGGvRV-----SPtTwARwdlNPG--PPPC 78
gi 74576381   18 KYGDIIIRERKGRYYVYKLEY-ENGNVKETYVDPLVDVVETYEKLKd-SSG-GFrgyppNP-T-TD---PPG--FEPG 85
gi 74542143    8 KYGD-IIRERKGRYYVYKLET-INGEVKETYVGPLVDVVKTYEKLKe--NGvWV-----SP-T-MG---PLG--FEPR 69
gi 74574807    9 KFGDYILRERKGRYYVYKLET-INGEVKERYVAPLIDVVETYIK----IMGaGV-----VPpQwARwdlNPG--PPPr 74
gi 74574767    9 KFGEYILRERKGRYYVYKLET-INGEVKERYVAPLIDVVETYIKLKe-SGSvGV-----SP-T-VR---PPG--FEPG 72
gi 74542104   18 KYGDIIIRERKGRYYVYKLEM-INGKVRETYVGPLIDVVESFIKLKe-IGGvGI-----SP-T-TD---PPG--FEPG 81
gi 138570      9 KYGDYILRERKGRYYVYKLEY-ENGEVKERYVGPLADVVESYLKMK--LGVvGD-----TPlQ-AD---PPG--FEPG 72
gi 74574840   16 SAGQYKIRQRGNKYYVYKIEKdSNGNVKETYVGPLDKIVEFYVS----IGGvGV-----SP-T-VD---RPG--FEPG 77
gi 342306334   7 SAGQYKIRQRGKKYYVYKIEKdSNGNVKETYIGPLDKIVE--IA----LGVlGG-----VP-L-TQ---WTGrdLNPG 68
gi 332695544   7 TFGDIRIREVKGKYYVYLIEKgDGGQRRDHYIGSLDKIIETYVS----IGGvGV-----PP-T-VR---GAG--FEPA 68
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap