Conserved Protein Domain Family
YbbR

?
pfam07949: YbbR 
Click on image for an interactive view with Cn3D
YbbR-like protein
The members of this family are are all hypothetical bacterial proteins of unknown function, and are similar to the YbbR protein expressed by Bacillus subtilis. One member is annotated as an uncharacterized secreted protein, whereas another member is described as a hypothetical protein in the 5'region of the def gene of Thermus thermophilus, which encodes a deformylase, but no further information was found in either case. This region is found repeated up to four times in many members of this family.
Statistics
?
PSSM-Id: 311757
View PSSM: pfam07949
Aligned: 185 rows
Threshold Bit Score: 30.3399
Threshold Setting Gi: 81689810
Created: 26-Jul-2016
Updated: 4-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2KQ1_A         14 LELT------VLYDEERYDIVEQT-ETVQVDLEGPR-GVLTVFRFARPSYevfvDLTEAGEgs---hTVDVEHRGFPGDL 82
82_pfamImport   1 VPIE------FYNTPEHLEISSERiQRAEIRVQGPA-RILRQMTNADIDAv--iDLAGAHVgehtfdLTPKQIRHLPHNV 71
gi 122333523   40 VPLQ------VQGLPADMMIVNDFpEHVRVTIKGLQ-SRLKELRQQDLTVp--lDVSDLTTpg--vvERGMQLSSVVLPT 108
gi 81405378    34 VPLQvv---gLGEGRRALGLPREVl----LRLRGPA----PLLEGRALPVsaylDLSGA-Ege---vVREVRVAAPQGVE 98
28_pfamImport   1 FRVal---dtRGKVAQGLTISSSLpQEVTVRVQGRNiIQLSGVKAQDFQAt--vDLNNLQEgv---nNRIIQVTAPSGLQ 72
gi 123523880   40 VPLE------TENLSSGL-VVADRpAEVQVRVEGRK-AAVANLLPRDVHAy--aDLRDAKVgd---nVLPVRVDVPEGIN 106
gi 122987275   38 VPLE------LKNVPADLIVANEVpSLVNLRISGPR-TLLSNLESSSLSLs--vDLRGLEPglttfkRLDENLNIPSALK 108
16_pfamImport   1 VPLE------VRNVMSGL-VVEDApDTVRVKVRGPR-SIIAGVMTKDLKSy--iDLRGLGEgq---hNVRVAAAIPSSLN 67
gi 81552087    61 VPITvrdttgASGSDERRAVSDLNpETVRVTLTGRP-ERLNELRPSNIEAl--lDVTGVPEgs---fNRPVQIVAPSNTV 134
gi 81389778   339 VPIA------VQNAPEGLEVTLSQ-GTVEVRLTGRY-TLVHPLDASAVIAy--vDVAGLGPgt---hRLPVKVIYPPEIV 405
                          90
                  ....*....|....*.
2KQ1_A         83 AVTVE---PRMARVQL 95
82_pfamImport  72 NIVQVv--PSQIRLDL 85
gi 122333523  109 GLRIEkvkPERLQLQV 124
gi 81405378    99 VLEVV---PARVGVVV 111
28_pfamImport  73 VVQVN---PARVEITA 85
gi 123523880  107 VIHVN---PAQVTIRV 119
gi 122987275  109 VVRLS---PSYVEVKL 121
16_pfamImport  68 LVEVS---PDKVTVRL 80
gi 81552087   135 LSKQV---PERVQGFV 147
gi 81389778   406 ETAID---PAVIEVTI 418
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap