2KXY,5HQH


Conserved Protein Domain Family
YbbR

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pfam07949: YbbR 
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YbbR-like protein
The members of this family are are all hypothetical bacterial proteins of unknown function, and are similar to the YbbR protein expressed by Bacillus subtilis. One member is annotated as an uncharacterized secreted protein, whereas another member is described as a hypothetical protein in the 5'region of the def gene of Thermus thermophilus, which encodes a deformylase, but no further information was found in either case. This region is found repeated up to four times in many members of this family.
Statistics
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PSSM-Id: 336877
View PSSM: pfam07949
Aligned: 185 rows
Threshold Bit Score: 29.1779
Threshold Setting Gi: 122266258
Created: 26-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2KXY_A        11 VPVklELTGDKASNVSSISYSF--DRGHVTIVGSQEAMDKIDSITVPV----DISQVTE------DTSKTLELKAEGVTV 78
gi 3915319    43 ITTe-KEFKIILNDQIALGKIPdfSKIKITIKVNKDDLKYLDLNKIILf--iEASSIKIpg--syKLPIKIKNLNSIHIA 117
gi 81417706   59 IPIs---YSELPPDIGVSGRLP--DRLDIMLKDQG---IVLLTYKLKGfspiNISPSKAqlhkkkSMRLNKWDLVELLQK 130
gi 81316239   59 IPVr---LKGVPNHVVLTSEPP--SELRIKVKDKGTVLLNYMLGKSFFpvniDFSESKVpd---nHVKIYASELEKKIAG 130
gi 123552629  34 MRIe---MTGMPPDMIVLDGLP--SKISARIRGPKGLIRGLNGREFSYp--lDLSQLKQge---nVISVLPDNIPLKGAF 103
gi 446281710 337 IQ-----KNGLAKDVTAQLLSPqdGKISVDISGETSIVDKITANQITAa--iNLQNVSPgt---kDVSIQ---VSGPGNI 403
gi 497603590 281 MQVy---MSGLKNTFDAQMITPanGKVSVTITGEKKTVDGIAAKDLSVi--aNLSKSKAgs---ySIPLELNGLPDNVAY 352
gi 492459652  59 VPLr---LKNVPSDVVLTSELP--DELRIGVKDRGTVLANYMLGQTFYpivvDFKDYEDkg---sRVRIPVSALMKKISV 130
gi 500265839  45 VPIr-YNISTLSKGLVMTESDT--KEVRIVVSGTQDELSKVDEKNIQAv--vDFTNVRQtg--emKLPININNPYHRINI 117
gi 490594174 322 VPVt---TEGTLDGY-TPELDT--KTIKVTINGPEDSVNSIDLSKFKCt--iDISKLTAdg---gSVKPNI--SNSYDNI 388
                         90
                 ....*....|....*.
2KXY_A        79 Q-----PSTVK--VNL 87
gi 3915319   118 Ey---kLSKTNvlLNL 130
gi 81417706  131 Ql---eTSTTV--AAI 141
gi 81316239  131 Ql---nVSTRL--LSV 141
gi 123552629 104 QvveinPPRLQ--LQA 117
gi 446281710 404 Si---ePKQKS--AKV 414
gi 497603590 353 Vi---nPRQAD--FII 363
gi 492459652 131 Ql---nQTTKL--LTI 141
gi 500265839 118 Esi--yPKNVV--VNI 129
gi 490594174 389 KvvsinPTEVK--VTF 402
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