Conserved Protein Domain Family
SusD

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pfam07980: SusD 
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SusD family
This family includes several hypothetical proteins. It also contains RagB, a protein involved in signalling and SusD, an outer membrane protein involved in nutrient binding.
Statistics
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PSSM-Id: 311783
View PSSM: pfam07980
Aligned: 57 rows
Threshold Bit Score: 106.422
Threshold Setting Gi: 500644436
Created: 22-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3QNK_B       236 KEIIFd------VQYKSpDVYNNXXVCNXVTYINDKYgdrgw--------------------------gglgpTQELIDA 283
gi 503071506 287 TEGIMm------VIDRE-DYEGIGATSRGTSIQRQAVplwwrfintp----------------dgqngmtdspSAEINQV 343
gi 500648148 299 KEAILv------MPNRY-GSDSGIRTRTMRNLVPWWNatsistpdnklav-----------drfalthasydaSMDYNRT 360
gi 156861184 285 PEVVMa------LAMEVgQVNTGWMRNMPFMPYNCWDyfggtysq--------------------sgwncvclAPSWDNS 338
gi 500936988 290 KEVMLy------ADHTE-SSEYYNGGSLTYGSGGAPDnfagwmvtwnyts-----------irskngsasvssVQREANQ 351
gi 500645087 276 MEAIWt------FEMEYnRDVNGGTIDNPQQRRNWVPafhkldgmvnad------------siggrgngrlriSNFVKYG 337
gi 500933182 258 KESLFtyqkdflLGPEDgLAGGGGSWLSSVFTHRTYElnaneliqdva--------------yggqalgwfypNNYLKSL 323
gi 491851820 273 DEIIWs------IQYTS-DLVYNGMDLTDIDANSMHRyfvgwynksaknpninidglwshsrvygreyrctmpTYYYISL 345
gi 500644436 291 NEILMs------CQHTS-SATGRFGNRTYSYFNPQFSnfsggwtqrgqy-------------iggmdfqrcrpTEYAYAI 350
gi 492426245 287 KEALWk------HRWFS-GNGSHGSSSGNYRLNRNDEyflcnvfnfgaitdtq----efrlaweggpnglfmpTQHLLSL 355
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3QNK_B       284 Fexadgtpatqysqa-padqvfdintcgiYEGREPRFY-A-NIVFHGS-QI---F------------------------- 331
gi 503071506 344 Tsvgrgigrnrg-------thystkeiwkDANNDERHKlG-NWLDMEDlVY---Napsll-------------------- 392
gi 500648148 361 Fgrgvgvvrptyf-----aenslwylngnHDDGDLRHN-S-KVGNWVH-MEdlkYnnpns-------------------- 412
gi 156861184 339 GnvqpyggtdnpksfltdygdklgavyerFHDKDIRKQ-N-YVYNETT-GN---Yqgiflkgaikanygkga-------- 404
gi 500936988 352 Flgrpwtrmap--------pievftktfaDKTNDSRYD-G-TFAAVYR-GN---Wnlqgtglttvptltnangl------ 411
gi 500645087 338 L----------------------------YEKGDIRNS-NyNIRRVMW-YN---Kpgfskevgi---------------- 368
gi 500933182 324 Y----------------------------DQANDLRFK-TyYYSDNYQ-DY---Ki------------------------ 346
gi 491851820 346 F-----------------------------DKFDKRRE-Q-TFQTAWC-RI---Pdnwnnepdysdtllir--------- 381
gi 500644436 351 F----------------------------DNVNDSRMW-K-TFKTVYG-LN---Niaskaddvvatngitadqvptlgdq 396
gi 492426245 356 Yvq-------------------------eDGTLDPRFH-E-SFTTEWK-AN---Taytwdkgtvnrfdresnvegkkiev 404
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3QNK_B       332 ---------------------------------------------FNADKGAVTVDRYLXDTPDKGDGSLTGYNVWKWID 366
gi 503071506 393 -----------------------------------------esgnTYYGQNLELYLPDGTALCSDTIRNWYGWPQYKFFV 431
gi 500648148 413 -----------------------------------------vyygKHLSYSCINDNGEEQILCNDTVRTWFDWPHYKTWS 451
gi 156861184 405 -----------------------------alkadadrdgqdlvyvDQVGTFLNLGRNLETVMSPRWGETNSGVRLVRYPV 455
gi 500936988 412 ------------------------------------tikpgdavltflndepltpITYPSGQGDSGVGAGILPGRADYVI 455
gi 500645087 369 ------------------------------------dakgflvdkDKGIRNVTLKTGDQVIPHEGDSLNVFYPHPTKWGA 412
gi 500933182 347 --------------------------------------------nVPGNPKFGQPITNPAIAAPNGNYRAWHWSLKKYHD 382
gi 491851820 382 ------------------------------tldvvsdeyvksyedRGIIVDNITDLYDINTGIPTINGRSCHHTMTKYLD 431
gi 500644436 397 giifilnkksdnrfkdatnsdygtvgrggiahsfvnpetnkwvpnVFPVYAGGQYVLNTYGVSGNPAQSNVFCGINKTDD 476
gi 492426245 405 gqlaikfim--pqdenyaeesakklekdylvvdykdvyddakknvKMNYSYSNPSEGYTSDGKSENLFNFFYPSLNKHNS 482
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3QNK_B       367 ydny------------------nypyAGAGSPDFSTNWIILRYAEIYLNDAEARLETGDVEG--ARKAVNXIRQRV---- 422
gi 503071506 432 pd-----------------------pKRVKPQGGHGDWYVYRIAETYLMRAEAHFWNDDNDL--AANDINAVRLRA---- 482
gi 500648148 452 esped-----------------eaphLNNYQGSGYSDFYLYRLAETYLLRAEANYYLGNIEE--ATADVNIIRQRA---- 508
gi 156861184 456 y------------------------pESAGIDFQNIDEVEFRLSEVVYTLAECKMRAGDTEG--AKELVYRVKTRY---- 505
gi 500936988 456 spngisrivypgfwklgpyrtdnaggLGQPNAASTRPYPVAKFSELYLVAAEAAV-KGATGTlsARTLVNVIRARAgkwr 534
gi 500645087 413 yd-----------------------eTDDFGYAVVKDWPVMRLGETYLLRAEARFRQGNTQG--AADDINVLRDRAfkdy 467
gi 500933182 383 t------------------------eKLPMTSNSYKDYMYYRLAETYLLASEAHHNLGNDTK--ALAYLNKVRRRGy--- 433
gi 491851820 432 ps-----------------------rDEAKREEGFKDLILMRLGEVYITLAEAYVRTNQPEK--AAEVITQLRKRA---- 482
gi 500644436 477 g------------------------sRTAEKGDAHRDVIMARTGETYLIKAEAQVRSGNFQD--AISTINQLRARAewkn 530
gi 492426245 483 snyy------------------vanaSKKRNGNLNATF-IMRTAEMYLIAAEADIYVNGGSN--ALKYINKIRTRA---- 537
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3QNK_B       423 --------------------------------------------------------------GLPDLTESD--------- 431
gi 503071506 483 --------------------------------------------------------------NADPITAS---------- 490
gi 500648148 509 --------------------------------------------------------------KCDif------------- 513
gi 156861184 506 --------------------------------------------------------------FTDKSALEQpgp------ 517
gi 500936988 535 w---------------------------------------------------------dnngNTAKIADNSaamt----- 552
gi 500645087 468 r---------------------------------------------------------avapGAGKVTA----------- 479
gi 500933182 434 -------------------------------------------------------------tGNPESTVTTfd------- 445
gi 491851820 483 --------------------------------------------------------------LIDGHESALkv------- 493
gi 500644436 531 gedreyytdgsmaflksaggdednstalstlgkckdangtkinnteafkasflqkntyylstGIERTTDASslqissyss 610
gi 492426245 538 --------------------------------------------------------------GANPLV------------ 543
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3QNK_B       432 -----------------PEKLRELIRKERRIEFAFEEQR-FYDVRRwKIGPETQTTLHGVRFVSPTEFKVTKTDIrtwn- 492
gi 503071506 491 ------------------DVNIDYILDERARELYYEENR-KTELTRiAYIFAKTGRSAYNGQSYSLDNFSTKNFWydrim 551
gi 500648148 514 ----------------ySKVNIDDIVDERARELYMEEWR-FTELSRiSYCLALSGKPDNEGKVYDVDKLYEDSFWwhrin 576
gi 156861184 518 ---------------gfTSFDMDWMLSEWGLEFLGEGRRrRTDLRRfDKFTQGQWWFFGRATDDGLSYPAKRDRKy---- 578
gi 500936988 553 -------------tatpAIIDINYILAERSREFFGEGYR-WYDLVR-TQKWNEIAGKYSIGGSNYGQHTPEVVTRtida- 616
gi 500645087 480 -----------------DQIDIDFILDERARELISEENR-RMTLVR-TNTLAERIKLNGDMEPAAPSNKVITGFDani-- 538
gi 500933182 446 ----------------lTAWTLNNYLDESARELAFENNR-WFLLKR-LGLLVERQNLYFRSSPSGTISGEVPLKMtpa-- 505
gi 491851820 494 ---------------taADVDMDFILEEGARELGCELNR-WYMLKR-SGKMVEWVKEHNPDITLIKDYHI---------- 546
gi 500644436 611 lpaedeailsamgvngdKDRLINFILNERTRECLGEWNR-WEELSR-TKTLVQRAKLFNPEAAANIADKHL--------- 679
gi 492426245 544 -----------------GVPTINTVLDERARELCGEYAR-FYDLKR-TGMLKDNSYLEEHHPDLAQFFKPEYA------- 597
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
3QNK_B       493 ----------------------drlyLTPVPHDEIVRS------------SVLK---Q-NLGY 517
gi 503071506 552 evtdfynlgi-rtihgdeytmspyhvLWPIPASAINANt----------qGTIN---Q-NVGY 599
gi 500648148 577 kynnyynkpdapivkgrkytigrhniNWPIPQSAIDANl----------lGKLG---Q-NPGY 625
gi 156861184 579 -------------------------eWYPLPQSALMVN------------PGLV---Q-NPNY 600
gi 500936988 617 -----------------------hhyLRPIPQGQLDGMems------adeKAKY---Q-NPGY 646
gi 500645087 539 ------------------------htLLPIPLTEIQLNk----------dGDLK---Q-NPGY 563
gi 500933182 506 ------------------------mvNMPIPQSQIDLM------------GKPE---GfNVGY 529
gi 491851820 547 --------------------------YRPLPQDALYEV------------TNLDvfvQ-NKGY 570
gi 500644436 680 --------------------------LRPIPQTFLDQLqhedgtnlsdeeKAAM---Q-NPGY 712
gi 492426245 598 --------------------------LRPISTNFTSTLeg---------gGGYY---Q-NPGY 621
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