Conserved Protein Domain Family
NABP

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pfam07990: NABP 
Nucleic acid binding protein NABP
Many members of this family are putative nucleic acid binding proteins. One member of this family has been partially characterized and contains two putative phosphorylation sites and a possible dimerization / leucine zipper domain.
Statistics
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PSSM-Id: 336892
View PSSM: pfam07990
Aligned: 23 rows
Threshold Bit Score: 420.699
Threshold Setting Gi: 474195535
Created: 27-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147775244   275 RAPSPCLTPIGGgRTAISEKRGINGSSSFNSVPPSMNESADLVAAL---SGMDLSTNGVI-DEENHLPSQIEQDV-EnhQ 349
gi 731412484   319 RLPVSGLPPVSN-RVYPVEK-NIVDMNVQNGRSSSMTELSNITATL---SGLSMSRNRCV-DENSHLQSQLHAEF-DdqS 391
gi 548832036   308 RSPSPCLPPAGG-RHSAIEKKAIVGSNAISGISSSVTDIVDIATSL---SGLNLSKNRLL-DEKSRLHPQ--QGM-IdhE 379
gi 695018435   310 RSPSPCLPPVGV-RNSDSDR-----SNGLGGVSSHMADYGDLVSAL---SDFNLSGKISL-DGECHVPAQLDEQF-RnqT 378
gi 566192329   301 msaisnLRHVGS-RVGPIEKKNVAGMSFQNDHSSGITELGEIGNSL---SGLSLLHTRLT-DQESHVRHQLQMDL-EneP 374
gi 1002243640  302 RTPSPCLPPVGV-RMGSTDKKVDGS-----AVASHNHDTADIAAAL---SSMNLSGSKMA-SLEAEVQNRAYQNF-GdqT 370
gi 474195535   344 RAPSPCLPPVGV-RMGKADKMVEGR-----NVASRNHDGSDTAAALsamSSLNLSGNN-MaNLESDVQNHIYQNFgGdqR 416
gi 937906551   302 RTPSPCLPPVGV-RMGSTDKKVDGS-----AVASHNHDTADIAAAL---SSMNLSGSK-MaSLEAEVQNRAYQNF-GdqT 370
gi 743895532   314 msaisnLRHVGS-RVGPIEKKNVVGMSFQNDHSSGITELGEIANSL---SGLSLLHTRLT-DQESHVRCQLQMDM-EneP 387
gi 223529499   318 RCPSSGLPPVGS-KVAFLEKKNAVGSTAQNGHLSGITELGEITATL---SGLNLSKLRHP-EQDSLI------EL-DnqA 385
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147775244   350 SYLF-NLQGGQSNIKQhsylkkse-----sghlqipsA---PQSGKASYSDSvksngvGSEL-NNSLMADRQAELHKSSV 419
gi 731412484   392 DFLL-NMPNGNSQSVQqqltdksk-----aakpytstN---YLDLARKNRIV------TDL--------DGQINFPKRTF 448
gi 548832036   380 KFLF-RVQNGH-QSQQhqlvnnsengplhppsisqspA---YAKLIDSNGNI------NDHS-ISKMGSDGLADWAKGT- 446
gi 695018435   379 ELLY-D--GDNRQYLQqkvidkpm-----spllknstNvvgYSDPSKRTSSL------TEIG-LSELTSDGQMNLPKQP- 442
gi 566192329   375 DFPF-NVPSSGDQTLQqqlreksn-----vvnlsfstS---YTDMPTNNGII------PNRN-TSKITSNGEVSISRRN- 437
gi 1002243640  371 DVLF-SVPKERRQLSQqklaqnad------eesinalE---YAAFPNGSGNF------NNSN-MSKLSVDSRSKFPIQS- 432
gi 474195535   417 DVLFnNVPKEHRQFSPhnlvhnad----------------eepinalEYAVFpngssnLSNPnMSKLAAESNSKFPTQS- 479
gi 937906551   371 DVLF-SVPKERRQLSQqklaqnad----------------eesinalEYAAFpngsgnFNNSnMSKLSVDSRSKFPIQS- 432
gi 743895532   388 DFPF-NVPSSGDQTLQqqlreksk---------------venlsfsTSYTDMprnngiIPNSnTRKITSNGEVSISRRN- 450
gi 223529499   386 DFLF-NTSDGYNH-LQqqlrdksn---------------aenfsfsASYIDVamkngaMPNLnASEFNTNGEVSIPKRTS 448
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147775244   420 PSGNSYLKGSSMSSHNGGGGLPSHYQQfV--DSTNSSIPNYGLGAYSMNPalaSMMASQLGAanlpplfenvaaasamgv 497
gi 731412484   449 SSASLYSKV-NSSGLSSLEGPS--YQN-A--NIPSIDFTGHVPSGYHVNQklnTMINNHNDS------------------ 504
gi 548832036   447 SSVSLYPKAPSSSSASNFDGSSTLYQN-S--NSQNAGLQNFNLNGYSMNQmslSSTNSHFCT------------------ 505
gi 695018435   443 SYTNVYKKVPSVGTT----ISKSLYPN-A--DVPNIDFSGSNSKSYTGGHglqTMVNNRLD------------------- 496
gi 566192329   438 SSTNLHSKM-NSSGLGCLERSHVHIQN-A--NVPIVDFTGRVPDDYS-TQklnSVIKNHLDKg----------------- 495
gi 1002243640  433 PHGNANNKGSLVSPT----GSVSLYQN-LngDNSNIDVSVRNNKIRSSSFg-sSMLNNQL-------------------- 486
gi 474195535   480 QHGNGHKKGSLLSPT----GPVYLYQN-LngDSSNIDVPGRHAKANSRSSg-sSMLNNHLN------------------- 534
gi 937906551   433 PHGNANNKGSLVSPT----GSVSLYQN-LngDNSNIDVSVRNNKIRSSSFg-sSMLNNQLS------------------- 487
gi 743895532   451 SSSNLHSKM-NSSGLGCLERSHVHIQN-A--NVPIVDFTGRVPDDYS-TQklnSVIKNHLDTg----------------- 508
gi 223529499   449 SFTNLHSKL-NSSGLGGLQRSNGHLQN-A--NIPSMNFVSHSPGAYTSNQkldSLLKNH--------------------- 503
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147775244   498 pgidsrvlgagLASGPnigaaTSESQNLNRIGNHMaGNALQAPFVDPMYLQYL-RTA-EYAAAQVAALNDPSVDRNYLGN 575
gi 731412484   505 -----------ALSG------SGDGQSLSRSGNWV-SSDLHS-YMEPHGVHYM-QGTsDYATRTAASQGDPSSVRNFIGT 564
gi 548832036   506 -----------GAT-Ls---eTNDVQSMNRAVNQV-GAGLQMPLMDPLYLQYM-QRAvEYAGHVTGNLGDPSAGRNYMGN 568
gi 695018435   497 ----------------------EEGQYLNTSGNQV-GSGFQGPIMDSLYAQYL-RSTsDSLVRGPGNL-DHYSGMNYLGS 551
gi 566192329   496 --------------------gHGIGHGFNRLGNQA-GS------LDPCYPQYL-QRIsDYATCPVATSSDPSV-RNYFGA 546
gi 1002243640  487 ---------------------SADGEYVNLLSNQG-GSGFQGQPMESMYAPYL-QANsDSPLGAATNLN-PFQGSSFSGS 542
gi 474195535   535 ----------------------TDGEYANLLSNQR-GTGYQVQPMDAVYAPYLqANP-NSPLGAAGSM-SPFRGSNFSGS 589
gi 937906551   488 ----------------------ADGEYVNLLSNQG-GSGFQGQPMESMYAPYLqANS-DSPLGAATNL-NPFQGSSFSGS 542
gi 743895532   509 --------------------gHGIGHGFNRLGNQV-GS------LDPCYPQYLqRIS-DYATCPVATSSDPPV-RNYFGT 559
gi 223529499   504 -----------LDAGSal-ggNGVGHSLNRAGDQA-GPEFHSQVMDSRYAQYLrRTS-DYETRTNGQL------RNFFGI 563
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147775244   576 SYVDLLGLQKAYLGALLSPQKSQYGVPLGSKSSGSNhHGYYGN-P-AFGV-GMSYPGSPLASPVIPNSPIGPGSPIRHND 652
gi 731412484   565 SHGDLLGLQKAYLETLLAQQKQQYELPLLGKSGGLN-QGYYGN-S-SYGL-GMAYPGNPMANSALPS--VGSGNPMFQND 638
gi 548832036   569 SYVDLLGLQKAYLG-LLAQQKSQYAMPFLSKSDGLN-HGYFGN-G-SCGV-GMQYSEFPVANSLLSAS-LGVGNPIRQGE 642
gi 695018435   552 SQMNLPEYQTAYLGALLAQQKLQYSMPLLSKSGGLN-HGFSSS-H-AFGI-GMPYPGSP-SSTTIHSPNLGSGSPVRLNE 626
gi 566192329   547 SDGDLDRIQKAYLETLLVQQKQQYELPLLTKSGGLN-QGYHRN-S-SYGL-SMPYPENSVAKSSLPS--VGSGS--FQSE 618
gi 1002243640  543 VPLDSPGYQKAYIASLLAQQKLQYGVPYLGKSGSLS-PNIYGSdP-AFGIgGMAYLSSPTSTPFISSPQ----GHVRQGD 616
gi 474195535   590 GHMDNAAYQKAYLASLLAQQKLQYGMPYMGKSGGLS-PTLYGS-EqAYGM-DMAYLSSPTSSHFIPSPQ----GHARQGD 662
gi 937906551   543 VPLDSPGYQKAYIASLLAQQKLQYGVPYLGKSGSLS-PNIYGS-DpAFGIgGMAYLSSPTSTPFISSPQ----GHVRQGD 616
gi 743895532   560 SDGDLDRIQKAYLETLLVEQKQQYELPLLTKSGGLN-QGYHRN-S-SYGL-SMPYPENLVAKSTFPS--VGSGS--FQSE 631
gi 223529499   564 SHGDLDEVQKAYLEALLAQQNQQYE-PLLVKSGSMN-QGYHRN-S-SYGL-GMPYLGTSMANSVLPS--VGSGS--FQNE 634
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|..
gi 147775244   653 LN-MRYPSGMRNLagGVMAPWHLDAGCNMDEGFASSLLEEFKSNKTKCfELS 703
gi 731412484   639 QI-SCFTSMMRSSmgGPITSWHTDTS-NMEGRFASTLLEEFKNNKTRSfELS 688
gi 548832036   643 RN-HRFPA-MRSSa-GATGSWHSENGGNMEDCFASSMLDDFKSNKMKCfELS 691
gi 695018435   627 RL-SRIPSSMRSApgGSIGSWITENG-TMKEGYMSSLLEEFKNNKTRSfELS 676
gi 566192329   619 RA-AHLAPMMRNSigGSIGSWQSDIGSIAERRPSSSSIEGFKNNKTGSfEPS 669
gi 1002243640  617 RL-ARISSVGKTTtgGPMGSWNSDNG-LIDNGYGSSLLEEFKTNKTRSfELl 666
gi 474195535   663 RLtTRIPSMARSTtgGAMGSWSSENG-LVDNAYESTLLEEFKTNKTRSfELl 713
gi 937906551   617 RL-ARISSVGKTTtgGPMGSWNSDNG-LIDNGYGSSLLEEFKTNKTRSfELl 666
gi 743895532   632 RA-AHLASTMRNSigGSIGSWQSDIGCIAERRPSSSSIEGFKKSKNGSfEls 682
gi 223529499   635 QV-AHFTSTVRNSmgGSIGSWHPDVGSNIERRYVSSLLDEFKNNKTRSfELS 685
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